The largest database of trusted experimental protocols

13 protocols using orca r2 digital camera

1

Cell Growth and Death Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The methylene blue (MB) assay was used to carry out cell growth analysis in 96 well plates as previously described [42] (link). Propidium iodide (PI, 2 μg/ml final concentration; Sigma) staining was used to assess cell death either in live cultures or in PFA-fixed cells. Nuclei were counterstained with Hoechst 33258. Staining was visualized either using a fluorescent inverted microscope (Olympus 1X71) with a monochrome ORCA R2 digital camera (Hamamatsu) or as for immunocytochemistry.
+ Open protocol
+ Expand
2

Quantifying β-cell proliferation dynamics

Check if the same lab product or an alternative is used in the 5 most similar protocols
Proliferating cells were labeled during 24 hours by sequentially administering thymidine analogs 5-chloro-2′-deoxyuridine (CldU, Sigma) and 5-iodo-2′-deoxyuridine (IdU, Sigma) in drinking water at 1 mg/ml. Staining of thymidine analogs was done as described [33] (link). At least 20 islets were analyzed per animal. Images were acquired with a Zeiss Axioskop 2 (Carl Zeiss, Jena, Germany) and captured with an Orca-R2 digital camera (Hamamatsu, Hamamatsu City, Japan). CldU+ and IdU+ single as well as CldU+IdU+ double-labeled insulin+ β-cell ratios were calculated as means ± s.e.m., with at least 5,000 β-cells counted per experimental group.
+ Open protocol
+ Expand
3

High-throughput Screening of Anti-influenza Compounds

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cultures of HEK293T cells in 96-well plates were transfected with a mixture of plasmids expressing the polymerase subunits (pCMVPB1, 3 ng; pCMVPB2His, 1.5 ng; pCMVPA, 2.5 ng) and NP (pCMVNP, 120 ng) and a genomic plasmid expressing a viral RNA-like GFP-encoding gene (pHHEGFP, 120 ng) by the calcium phosphate technique (88 (link)). As a control, HEK293T cells were transfected with 12 ng of pCAGGsGFP. At 2 hpi, compound stock solutions were diluted to 50 µM in 100 µl of growth medium (DMEM–5% fetal bovine serum [FBS]) and this mixture was added to each well. The cells were incubated at 37°C for 5 days, after which images of each well were collected on a Leica DMI 6000B with an ORCA-R2 digital camera (Hamamatsu). Images were acquired with a 10× (0.30 numerical aperture) objective and a resolution of 1,344 by 1,024 pixels. Quantification of the fluorescent signal was performed with the ImageJ software. Compound toxicity was determined by evaluating the metabolic activity of the cell biomass by the MTT cell viability assay (89 (link)).
+ Open protocol
+ Expand
4

Imaging Primitive Erythroblasts, Megakaryocytes, and Macrophages

Check if the same lab product or an alternative is used in the 5 most similar protocols
Images were acquired with an ORCA-R2 digital camera (Hamamatsu) with an X-Cite series 120 illuminator (EXFO), or a Ds-Fli1 digital camera (Nikon) with NIS-Elements AR software on an Eclipse 80i microscope (Nikon) with 4x (Numerical Aperture (NA) 0.13), 10x (NA 0.3), 20x (NA 0.5), or 40x (NA 0.75) objectives. Hemoglobin autofluorescence at 515–555nm was used to identify primitive erythroblasts. Live images of megakaryocyte and macrophage cultures were captured with a Ds-Fli1 digital camera (Nikon) on an Eclipse TE2000-S microscope (Nikon) with a 20x objective (NA 0.45). Confocal images were acquired on a TCS SP5 microscope (Leica) with a 40x objective (NA 1.25). Images were processed for uniform brightness and contrast using NIS-Elements AR and/or Adobe Photoshop. Whole yolk sac images were merged from several 4x or 10x images with Adobe Photoshop.
+ Open protocol
+ Expand
5

Hypoxia Measurement in 3D Cell Cultures

Check if the same lab product or an alternative is used in the 5 most similar protocols
Hypoxia was measured using commercially available ImageIT Hypoxia dye per manufacturer's instructions. In short, ImageIT dye was added to cells in collagen gels at a concentration of 10 μM for 30 min at 37 °C. Control gels were then placed in a hypoxia chamber with 100% CO2 flush for 30 min before being imaged. Gels not treated with hypoxia were imaged after 30 minute incubation with dye in regular 5% CO2 incubator. Images were acquired using a Nikon TE300 inverted microscope (Nikon Instruments) equipped with an ORCA-R2 digital camera (Hamamatsu). Light was passed from a 100-watt mercury arc lamp through an excitation filter of 530–560 nm, through a 565 nm dichroic filter to a 590–650 nm emission filter. Images were acquired using SlideBook, version 5.0 (Intelligent Imaging Innovations) and processed using ImageJ software. Mean fluorescence intensity was measure from 3D stacks of images for all cells in a field of view and divided by the mean fluorescence intensity of the background containing no cells.
+ Open protocol
+ Expand
6

Immunohistochemical Analysis of Amyloid-beta

Check if the same lab product or an alternative is used in the 5 most similar protocols
Periventricular brain tissue (100 μm thick, as above) was subjected to antigen retrieval consisting of boiling in 10 mM sodium citrate, pH 6, for 10 min followed by three PBS washes, then treatment in 88% formic acid (ThermoFisher Scientific) for 10 min. Tissue was then washed three times in PBS and endogenous peroxidase activity was quenched by incubation in 3% hydrogen peroxide for 10 min. After three PBS washes, tissue was blocked for 1 h at RT in 10% (v/v) milk in PBS followed by incubation for 24 h at 4°C with anti-Aβ42 clone D9A3A 14974 (1:1000; Cell Signaling Technology) in blocking solution. Whole mounts and sections were then washed three times for 10 min each with 0.1% Triton X-100 in PBS and incubated for 1 h at RT with biotinylated anti-rabbit secondary BA-1000, 1:300 (Vector Laboratories). Biotinylated secondary antibody detection was completed using the Vectastain ABC Kit and visualized using the Vector DAB Substrate Kit (Vector Laboratories) according to the manufacturer’s instructions. The sections were imaged using Stereo Investigator software (MBF Bioscience) with a Zeiss Axioskop 2+ microscope (Carl Zeiss MicroImaging) and an Orca-R2 digital camera (Hamamatsu Photonics).
+ Open protocol
+ Expand
7

Quantifying Micronucleus Formation in Hut78 Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Hut78 cells were seeded at 106/2 mL; treated with 1-µM 8–MOP + 1.6 J/cm2 UVA and incubated for 24 h, 48 h and 72 h. Then, ca. 50,000 cells resuspended in phosphate buffered saline (PBS) were placed on a microscopic slide, air-dried and fixed in 4% PBS-buffered formaldehyde for 10 min. Nuclear and peri-nuclear DNA were stained using 1-µg/mL 4′, 6-diamidino-2-phenylindole, dihydrochloride (DAPI; Sigma-Aldrich) solution in water. Images were acquired using an ORCA R2 digital camera and HCImage software (both from Hamamatsu Photonics K.K., Hamamatsu, Japan). Experiment was performed in triplicate. Intact and micronucleated cells were counted manually in five random areas of each slide, and the percentage of micronucleated cells was calculated versus the total cell number.
+ Open protocol
+ Expand
8

Fura-2 Calcium Imaging of DRG Neurons

Check if the same lab product or an alternative is used in the 5 most similar protocols
Intact DRG were prepared and incubated in artificial cerebro-spinal fluid containing Fura-2/AM (5 µM) and Pluronic F-127 (0.5 mg/ml) (Invitrogen, Inc.). Fluorescence in the small- and medium-sized DRG neurons (diameter, 15–45 µm), but not the glial cells surrounded, was measured at 340 nm and 380 nm excitation and 520 nm emission (Olympus IX51 with ORCA-R2 digital camera, Hamamatsu Inc., Japan). The 340/380 nm emission ratio was used to determine [Ca2+]i. After each recording, 4-bromo A-23187 (BR-A, 10 µM, Sigma) was used to check the viability of the cells.
+ Open protocol
+ Expand
9

Quantifying Microscopic Pathology in C. elegans

Check if the same lab product or an alternative is used in the 5 most similar protocols
Worms were mounted onto 2% agar pads and anesthetized with 0.2% levamisole. Nomarski microscopy images were acquired with an Orca-R2 digital camera (Hamamatsu) and either a Leica DMRXA2 microscope or a Zeiss Axioskop 2 plus microscope, driven by Volocity 6.3 software (Improvision, Perkin-Elmer). Images of pathology were analyzed semiquantitatively [13 (link), 57 (link)] (Figures S1A–S1E). For pharynx, gonad and tumor pathologies, images were randomized, examined, assigned scores of 1-5 by two independent scorers, and mean values calculated and rounded. Here 1 = youthful, healthy appearance; 2 = subtle signs of deterioration; 3 = clearly discernible, mild pathology; 4 = well developed pathology; and 5 = tissue so deteriorated as to be barely recognizable (e.g., gonad completely disintegrated), or reaching a maximal level (e.g., large tumor filling the entire body width). Intestinal atrophy was quantified by measuring the intestinal width at a point posterior to the uterine tumors, subtracting the lumenal width and dividing by the body width. Yolk accumulation was measured by dividing the area of yolk pools with the area of the body visible in the field of view at 630x magnification.
+ Open protocol
+ Expand
10

Cell Morphology Analysis Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were cytospun (Shandon II, Thermo Fisher Scientific), Wright-Giemsa stained, permounted and coverslipped. Images were acquired on a DS-Fi1 camera (Nikon) attached to an Eclipse 80i microscope (Nikon) with a using 40X/0.75 objective.
To examine the morphology of living cells, 10 μl of embryonic blood was loaded between two cover slips mounted onto a glass slide and covered with a third cover slip. Images were acquired with an ORCA-R2 digital camera (Hamamatsu) and NIS-Elements software on an Eclipse 80i microscope (Nikon) with a 40X/0.75 objective. Photoshop CS5 software (Adobe) was used for image processing.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!