The largest database of trusted experimental protocols

Axio observer zi

Manufactured by Zeiss
Sourced in Germany

The Axio Observer ZI is a high-performance inverted research microscope designed for a wide range of applications in cell biology, developmental biology, and materials science. It features a fully motorized and programmable system, allowing for automated image acquisition and analysis. The microscope is equipped with advanced optics and advanced fluorescence imaging capabilities, making it a versatile tool for researchers.

Automatically generated - may contain errors

12 protocols using axio observer zi

1

Immunofluorescent Detection of p53 Apoptosis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The immunofluorescent expression of wild-type p53 apoptotic protein was detected using a Carl Zeiss Axio Observer ZI (Jena, Germany). The MCF-7/DOX cells were seeded at 1 × 105 on a coverslip, treated, and allowed to incubate overnight. The following morning, cells were fixed with 4% paraformaldehyde, permeabilised with 0.1% Triton X-100 in PBS, and blocked for non-specific binding with 10% bovine serum albumin (BSA) in PBS. The immunostaining was performed with primary monoclonal antibodies (1:100, anti-p53; CBL404 Merck company) overnight, followed by washing three times with PBS and incubation with secondary fluorescent-labelled antibody (1:500, Goat Anti-mouse (FITC), ab97050, Abcam) for 1 h at room temperature. Next, the nuclei of the cells were counterstained with 1 µg/mL 4′,6-diamidino-2-phenylindole (DAPI), and the coverslip was mounted for protein expression observation using a Carl Zeiss Axio Observer ZI (Jena, Germany).
+ Open protocol
+ Expand
2

Microscopic Fiber Diameter Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Fiber diameters were measured using a Zeiss Axio Observer ZI inverted microscope (Zeiss, Stuttgart, Germany) with a phase-contrast 20x objective lens. The quantification was completed using the Axiovision LE software (Zeiss, Stuttgart, Germany).
+ Open protocol
+ Expand
3

Quantifying Oligodendrocyte Density in White Matter

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cryosections of fresh frozen motor cortex (16 µm) were fixed in 4% paraformaldehyde for 30 min at RT. Antigen retrieval was carried out using 1% sodium lauryl sulfate (SDS) for 5 min at RT. Sections were blocked with 10% normal donkey serum in 0.3% Triton X-100 in PBS for 1 h at RT before overnight incubation with the primary antibody at 4 °C (Olig2, 1:100, Millipore, Bayswater, WA, Australia, MAB9610). Sections were then incubated in secondary antibody (AlexaFluor-488, 1:400, Jackson Immuno, West Grove, PA, USA, 711545152) for 2 h at RT. Sections were incubated with Hoechst 33342 (1:1000, Invitrogen, H3570) for 10 min and mounted (DAKO Mounting Medium, Agilent Technologies, CS703). The white matter was visualised using a Zeiss AxioObserver ZI and ten images were taken per slide using a 20× objective. The percentage of Olig2-positive cells to total density of Hoescht+ nuclei in the white matter for each sample was determined.
+ Open protocol
+ Expand
4

Microscopy Methods for Fluorescent Imaging

Check if the same lab product or an alternative is used in the 5 most similar protocols
Fixed slices or LV wholemounts were examined with an upright Zeiss Axio Observer.ZI epifluorescence microscope, using an apochromat 63 × 1.4 NA objective and a Zeiss Apotome with an H/D grid.
Confocal image stacks were collected with a 40 × 1.3 NA water objective on Olympus FV1000 and FV1200 microscopes, or with a 40 × 1.4 NA oil objective or a 63 × 1.4 NA oil objective on an inverted LSM 880 Airyscan Zeiss microscope with 440, 515 and 560 laser lines to excite, independently, Cerulean, mEYFP and mCherry, or Alexa 488, 594 and 633/Cy5.
Finally, images of the in situ hybridization sections were taken with a Leica MZ16 F Fluorescence Stereo Microscope (Leica Microsystems), equipped with a plan-apochromatic objective 1.0x (Leica, 10447157) and a Nikon DS-Ri1 High Resolution Color Camera (Nikon), with the assistance of the NIS-Element F Ver5.502 Imaging Software (Nikon).
+ Open protocol
+ Expand
5

Microfluidic Imaging and Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Microfluidic devices were imaged with fluorescence microscopy (Zeiss Axio Observer ZI with Zen Pro software suite) equipped with Apotome.2 (Zeiss) at 10× and 20× magnification. Phase contrast images were uploaded into NIH ImageJ software (NIH ImageJ software) and processed, while fluorescent images were processed in both ImageJ and Zen Pro Imaging software. Besides mono‐cultured ECs which were captured in the vascular region, all IF images were captured within the stroma layer of the device.
+ Open protocol
+ Expand
6

Spinning Disc Confocal Microscopy of GUVs

Check if the same lab product or an alternative is used in the 5 most similar protocols
GUVs were imaged on a spinning disc confocal microscope (AxioObserverZI, Zeiss, with motorized nosepiece and spinning disk confocal, Yokogawa CSU-10) for confocal microscopy with a cooled EMCCD camera (Cascade II, Photometrics). Images were acquired using a 63× objective (Zeiss, Plan Apochromat 1.4 NA, oil), and analyzed using ImageJ (National Institutes of Health) and Matlab (Mathworks).
+ Open protocol
+ Expand
7

MSC Viability Assessment on Hydrogels

Check if the same lab product or an alternative is used in the 5 most similar protocols
MSCs encapsulated or seeded on hydrogels were evaluated for viability using an ethidium homodimer-1/calcein acetoxymethyl (AM) LIVE/DEAD® Viability/Cytotoxicity Kit (ThermoFisher, Waltham, MA, USA). For the long-term viability study assessing hydrogel biocompatibility, seeded cells were stained for viability on days 1, 4, 7, 10, 14, and 22. To assess cell survival following hydrogel actuation, viability stains were performed at several timepoints after electrical stimulation: 24 hrs, 48 hrs, and 72 hrs. After each timepoint, fresh dye solution containing calcein AM (2 μM) and ethidium homodimer-1 (4 μM) was prepared. Media was aspirated out, and 1 mL of the dye solution was added to each well (n = 4) and incubated for 10 minutes in a humidified incubator with 5% CO2 at 37°C before imaging with an epifluorescent microscope (Axio Observer ZI, Zeiss). Cells were observed at 10x magnification with 2 fluorescent channels that labeled cells live (green, ex/em; ∼450/475 nm) and dead (red, ex/em; ∼600/635 nm). Hydrogels were imaged in triplicate.
+ Open protocol
+ Expand
8

Immunofluorescence Detection of P-Glycoprotein

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunofluorescence microscopy was performed to detect resistant proteins like the p-glycoprotein (P-gp) qualitatively. Briefly, cells were grown on a coverslip, fixed with 4% paraformaldehyde, permeabilized with 0.1% Triton X-100 in PBS, blocked for non-specific binding with 10% mouse serum in PBS, and exposed to an unlabeled primary anti-P-gp antibody. The slides were washed and incubated for 1 h at room temperature with a secondary fluorescence-labeled antibody that binds to the primary antibody. The cell nuclei were counterstained with 1 μg/ml 4′,6-diamidino-2-phenylindole (DAPI). The coverslip was inverted onto a glass slide, mounted, and observed under a Carl Zeiss Axio Observer ZI fluorescence microscope.
+ Open protocol
+ Expand
9

EdU Assay for Cell Proliferation

Check if the same lab product or an alternative is used in the 5 most similar protocols
An EdU (RiboBio, China, C10310-1) assay was used to determine the cell proliferation rate. Cells were seeded in 96-well plates (1×103 cells/well) and cultured with DMEM (10% FBS) for 48 h. Then, 100 µl of EdU solution (50 µM) was added to each well and incubated for 2 h at 37°C. Then, the cells were fixed with 4% formaldehyde for 30 min and permeabilized with 0.5% Triton X-100 for 10 min at room temperature. Next the cells were washed with PBS for 5 min and 1X ApolloR reaction cocktail was added to each well (100 µl/well). Thirty minutes later, the cells were incubated with 100 µl Hoechst 33342 for 30 min. Finally, the cells were observed with an inverted microscope (Zeiss, Axio Observer. ZI, USA).
+ Open protocol
+ Expand
10

Measuring Cell Proliferation with EdU

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were plated at a density of 1×104 cells/wells in 24-well plates. After cells were attached overnight, AsA at indicated concentrations was added to each well for 12 h. Then, the cells were incubated with 5-ethynyl-20-deoxyuridine (EdU, Ribobio) for 2 h, and processed according to the manufacturer’s instruction. After three washes with PBS, the cells were treated with 300 μL of 1× Apollo reaction cocktail for 30 min. Then, the DNA contents of the cells in each well were stained with 200 μL of Hoechst 33,342 (Sigma-Aldrich, Germany) (5 μg·mL−1) for 30 min and visualized under a fluorescence microscope at 20× magnification (Axio Observer ZI, Carl Zeiss AG, Oberkochen, Germany).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!