The largest database of trusted experimental protocols

14 protocols using upright fluorescence microscope

1

Indirect Immunofluorescence Assay for ANA Detection

Check if the same lab product or an alternative is used in the 5 most similar protocols
Briefly, samples were diluted at 1:40 in phosphate-buffered saline and then placed on wells of commercial Hep2 indirect immunofluorescence ANA slides from ImmunoConcepts (Sacramento, CA). Following incubation, slides were washed and then the secondary antibody (anti-human IgG FITC conjugate) was added to each well. After incubation, washing and cover-slipping, slides were viewed by two blinded readers using a Leica upright fluorescence microscope, and compared against positive controls provided with the slides. Patterns and brightness were evaluated as negative or positive, with positives given a score of 1–4 based on staining intensity. If positive, the samples were titered. For sensitivity/specificity testing, a test was positive for any score from 1–4 at the 1:40 dilution. For ROC analysis, titers of 1:40, 1:80, 1:160 and 1:320 were considered as the different positive/negative cutoff points.
+ Open protocol
+ Expand
2

Immunostaining of Cardiac Tissue

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells cultured in vitro were fixed in 4% paraformaldehyde at room temperature for 25 min or heart tissues were dissected and fixed in 4% paraformaldehyde at 4°C overnight. The fixed heart tissues were washed three times with PBS and equilibrated in 30% sucrose at 4°C for 2 days before freezing and cryosectioning. Eight micrometer frozen sections were prepared. Cells or tissue sections were blocked with 5% BSA and 5% goat serum and then stained with the respective primary antibodies at 10 ug/ml at 4˚C overnight. Anti-mouse primary antibodies used: COLA1 (abcam, ab34710), cTnT (abcam, ab8295), pH3 (Millipore, 06-570), Ki67 (abcam, ab15580) or cCASP3 (Cell signaling technology, 9661). Alexa-Fluor-488- or Alexa-Fluor-546-conjugated secondary antibodies (Invitrogen) were used at room temperature for 30 min in the dark. For cell death analysis, an in situ cell death detection kit by TUNEL was also used per manufacturer's instruction (Roche, 1256792910). Slides were mounted with DAPI-containing fluorescence mounting medium (Dako) and fluorescence was detected with an upright fluorescence microscope, inverted fluorescence microscope or confocal microscope (all Leica). Images were processed with the ImageJ software and cTNT coverage was analyzed based on this formula: cTNT+ area/total area.
+ Open protocol
+ Expand
3

Quantifying IgA and Plasma Cells in Foreskin

Check if the same lab product or an alternative is used in the 5 most similar protocols
Foreskin tissues from two consenting, low-risk Ugandan men were frozen in Optimal Cutting Temperature (OCT) within 10 minutes of MC surgery and shipped to Toronto for analysis. Staining for IgA and the plasma cell marker CD138 was performed: foreskin tissue embedded in OCT was cut into 5 µm sections using a cryostat and acetone fixed. Sections were stained with anti-IgA-biotin (Southern Biotech), and anti-CD138-PE (Miltenyi). Sections were washed, stained with streptavidin-FITC (eBioscience) and rewashed. Sections were then stained with DAPI to identify nuclei, mounted, and visualized on a Leica upright fluorescence microscope. Images were acquired with Openlab software. In order to calculate the density of specific cell subsets, the surface area of foreskin tissue sections was quantified using Volocity 3D Image Analysis Software software (PerkinElmer, Waltham MA).
+ Open protocol
+ Expand
4

Immunostaining and Quantification of Cardiac Tissue

Check if the same lab product or an alternative is used in the 5 most similar protocols
Heart tissues were dissected and fixed in 4% paraformaldehyde at 4°C overnight. The fixed tissues were washed three times with PBS and equilibrated in 30% sucrose at 4°C for 2 days before freezing and cryosectioning. Eight micrometer frozen sections were blocked at 2% goat serum and then stained with the respective primary antibodies at 10 ug/ml at 4˚C overnight. Anti-mouse primary antibodies used: COLA1 (abcam, ab34710), cTnT (abcam, ab8295), Ki67 (eBiosciences 14-5698-82), pH3 (Millipore, 06-570) and Aurora B (abcam, ab2254). Anti-human primary antibodies used: cTnT (RnD systems, MAB1874), Ki67 (abcam, ab15580) and Aurora B (abcam, ab2254). Alexa-Fluor-488- or Alexa-Fluor-546-conjugated secondary antibodies (Invitrogen) were used at room temperature for 30 minutes in the dark. Slides were mounted with DAPI-containing fluorescence mounting medium (Dako) and fluorescence was detected with an upright fluorescence microscope, inverted fluorescence microscope or confocal microscope (all Leica). Images were processed with the ImageJ software and cTNT coverage was analyzed based on this formula: cTnT+ area/total area. For blind cell count of proliferating cardiomyocytes, contaminating cell types without cTnT expression and background staining without DAPI+ nuclei were excluded.
+ Open protocol
+ Expand
5

Rat Peritoneal Tissue Histological Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The rat peritoneal tissues were fixed in 10% formalin and then embedded in paraffin. The 4-μm sections were stained with hematoxylin and eosin and Masson’s trichrome as previously described22 (link).
Immunohistochemical analyses of XBP1s, F4/80, CD31 and α-SMA were performed by the same protocol used in the laboratory. Peritoneal tissue sections were washed twice with phosphate-buffered saline (PBS) and permeabilized with 0.1% Triton X-100 in PBS for 5 min at room temperature. After washing with PBS 3 times, the tissue sections were blocked for 20 min with 5% bovine serum albumin (BSA) in PBS. Primary antibody in 1% BSA in PBS was added overnight at 4 °C. Afterwards, the sections were washed twice in PBS and then incubated with secondary antibody in 1% BSA in PBS for 1 h at RT in the dark. The tissue sections were washed twice with PBS and mounted in Vectashield mounting medium. The sections were imaged on an upright fluorescence microscope (Leica).
+ Open protocol
+ Expand
6

Fluorescent Labeling and Imaging of Neural Tubes

Check if the same lab product or an alternative is used in the 5 most similar protocols
Embryos were assessed for successful fluorescent labels under a Leica upright fluorescence microscope. Neural tubes were dissected out while preserving the peripheral branchial arch. Hindbrains were prepared in an “open-book” conformation by cutting the dorsal most aspect of the neural tube along the dorsal midline. Neural tubes were incubated in 80% Glycerol in 4% PFA for several hours before imaging. Once mounted, embryos were imaged using the Leica TCS-SP8 confocal microscope within 2 days of the end of dye diffusion to limit the amount of unwanted diffusion of the dye.
+ Open protocol
+ Expand
7

Immunofluorescence Staining of Frozen Tissue Sections

Check if the same lab product or an alternative is used in the 5 most similar protocols
The fixed tissues were washed three times with PBS and equilibrated in 30% sucrose at 4°C for 2 days before freezing and cryosectioning. Eight micrometer frozen sections were prepared; and were blocked with 5% BSA and 5% goat serum. After that, the sections were stained with the respective primary antibodies at 10 μg/ml at 4°C overnight. Anti-mouse primary antibodies used: CD31 (Biolegend, Cat. No. 102501), isolectin B4 (Vector Laboratories, Cat. No. FL-1201-0.5) or α-SMA (Dako, Cat. No. M085101-2). Alexa-Fluor-488- or Alexa-Fluor-546-conjugated secondary antibodies (Invitrogen) were used at room temperature for 30 min in the dark. Slides were mounted with DAPI-containing fluorescence mounting medium (Dako) and fluorescence was detected with an upright fluorescence microscope, inverted fluorescence microscope or confocal microscope (all Leica). Images were processed with the ImageJ software.
+ Open protocol
+ Expand
8

Immunofluorescence Analysis of ECM Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
BEAS-2B cells were plated on cell climbing slices in a 24-well plate. Following the designated treatments, cell climbing slices were washed with phosphate-buffered saline (PBS), fixed with 4% paraformaldehyde, and then incubated with 0.5% triton X-100 for permeabilization. Then, the cells were blocked with 1% BSA for 1 h at room temperature. The primary anti-periostin antibody (1:200, ab152099, Abcam, USA), anti-fibronectin antibody (1:200, JF0582, Huabio, China), and anti-COL1A1 antibody (1:200, BA0325, Boster, China) were used to incubate the cell climbing slices overnight at 4°C. The primary antibody was then removed and fresh PBS was added. After washing with PBS three times, climbing slices were incubated with the secondary antibody goat anti-rabbit IgG (1:500, Abbkine, Hubei, China) and protected from light for 1 h. The nuclei were counterstained with 4ʹ,6-diamidino-2-phenylindole (DAPI) (1:500) for 5 min. After the final washing steps in PBS (3×10 min), the images were captured under an upright fluorescence microscope (Leica, Berlin, Germany).
+ Open protocol
+ Expand
9

Immunofluorescence Analysis of TNFSF15, Fibronectin, and COL1A1

Check if the same lab product or an alternative is used in the 5 most similar protocols
BEAS-2B cells were plated on cell climbing slices in a 24-well plate. Following the designated treatments, cell climbing slices were washed with PBS, fixed with 4% paraformaldehyde, and then incubated with 0.5% triton X-100 for permeabilization. Then, the cells were blocked with 1% BSA in PBS for 1 hour at room temperature. The primary anti-TNFSF15 antibody (1:200, DF3053; Affinity, Jiangsu, China), anti-fibronectin antibody (1:200, JF0582; HUABIO), and anti-COL1A1 antibody (1:200, BA0325; Boster) were used to incubate the cell climbing slices overnight at 4°C. The primary antibody was then removed, and fresh PBS was added. After washing with PBS 3 times, climbing slices were incubated with the secondary antibody goat anti-rabbit IgG (1:500; Abbkine Scientific Co., Ltd.) and protected from light for 1 hour. The nuclei were counterstained with 4′,6-diamidino-2-phenylindole (DAPI) (1:500) for 5 minutes. After the final washing in PBS (3 × 10 minutes), the images were captured under an upright fluorescence microscope (Leica, Berlin, Germany).
+ Open protocol
+ Expand
10

Immunofluorescence Analysis of Lung Sections

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunofluorescence analysis was performed with the following steps: after citrate antigen was repaired, the lung sections were blocked with 10% bovine serum albumin (BSA), subjected to incubation at 4°C overnight with primary antibodies. On the second day, the slides were incubated with the fluorescent secondary antibody at 37°C for 1 h, and then the sections were restrained with 4′,6′-diamino-2-phenylindole (DAPI) for nuclear location. The slides were observed under an upright fluorescence microscope (Leica, Germany).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!