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Humancoreexome 24 v1.0 beadchip snp chips

Manufactured by Illumina
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The HumanCoreExome-24 v1.0 BeadChip is a microarray-based SNP genotyping product manufactured by Illumina. It is designed to interrogate over 550,000 genetic variants across the human genome. The chip provides comprehensive coverage of common and rare variants, including those found in coding regions of the genome.

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Lab products found in correlation

Humancoreexome12 v1, by Illumina (2 mentions)

2 protocols using humancoreexome 24 v1.0 beadchip snp chips

1

GWAS on Candidemia Susceptibility

Cited 3 times
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The GWAS on candidemia susceptibility was previously described [8 ]. In short, this GWAS was performed in a cohort of 161 candidemia cases and 152 disease-matched controls of European ancestry whose demographic and clinical characteristics have been previously described [46 (link)]. DNA was genotyped using Illumina HumanCoreExome-12 v1.0 and HumanCoreExome-24 v1.0 BeadChip SNP chips. Genotypes were imputed using the human reference consortium reference panel [47 (link)] using the Michigan imputation server [48 (link)]. In total, 5,426,313 SNPs were tested for disease association using Fisher’s exact test with PLINK v1.9 [49 (link)]. The lambda inflation was calculated by taking the GWAS p-values for each of the 27 response-QTL SNPs, regardless of whether the GWAS p-value was significant.
de Vries D.H., Matzaraki V., Bakker O.B., Brugge H., Westra H.J., Netea M.G., Franke L., Kumar V, & van der Wijst M.G. (2020). Integrating GWAS with bulk and single-cell RNA-sequencing reveals a role for LY86 in the anti-Candida host response. PLoS Pathogens, 16(4), e1008408.
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2

Genome-Wide Association Study on Candidemia Susceptibility

Cited 2 times
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The GWAS on candidemia susceptibility was previously described [48] . In short, upon quality control per SNP and sample, this GWAS was performed in a cohort of 161 candidemia cases and 152 disease-matched controls of European ancestry whose demographic and clinical characteristics have been previously described [53] . DNA was genotyped using Illumina HumanCoreExome-12 v1.0 and HumanCoreExome-24 v1.0 BeadChip SNP chips. Genotypes were imputed using the human reference consortium (HRC) panel [71] (link) using the Michigan imputation server [29] (link). In total, 5,426,313 SNPs were tested for disease association using Fisher’s exact test with PLINK v1.9 [84] (link). Detailed results and statistics can be found in Table 1.
Bruno M., Dewi I.M., Matzaraki V., ter Horst R., Pekmezovic M., Rösler B., Groh L., Röring R.J., Kumar V., Li Y., Carvalho A., Netea M.G., Latgé J.P., Gresnigt M.S, & van de Veerdonk F.L. (2020). Comparative host transcriptome in response to pathogenic fungi identifies common and species-specific transcriptional antifungal host response pathways. Computational and Structural Biotechnology Journal, 19, 647-663.
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