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5 protocols using mouse anti kdel

1

Immunofluorescence Labeling of Drosophila Tissues

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The chitin-binding probe was prepared in our laboratory as described [91 (link)]. Chitin-546 was used at 1:10 dilution. The following primary antibodies were used: Chicken anti-GFP (1:200) (Abcam), Guinea Pig anti-Uif (1:300) [69 (link)], Mouse anti-Gasp (1:5) (DSHB), Guinea Pig anti-Cor (1:500) [66 (link)], Rabbit anti-Verm (1:100) [27 (link)], Rabbit anti-Kune-kune (1:200) [43 (link)], Mouse anti-DLG (1:1) (DSHB), Mouse anti-Spectrin (1:10) (DSHB), Mouse anti-Cnx99A (1:5) (DSHB), Rabbit anti-GM130 (1:200) (Abcam), Mouse anti-KDEL (1:200) (Abcam), Rabbit anti-Rab5 (1:200) (Abcam), Rat anti-Rab11 (1:100) [92 (link)], and Mouse anti-Rab7 (1:10) (DSHB). Antibodies generated in this study: Rabbit anti-Osi19 (1:300), Rat anti-Osi15 (1:25), Guinea Pig anti-Osi9 (1:10).
The following secondary antibodies (Invitrogen life technologies) were used: AlexaFluor 488 anti-chicken IgG, anti-rat IgG, anti-mouse IgG, anti-rabbit IgG, anti-guinea pig IgG; AlexaFluor 543 anti-rat IgG, anti-rabbit IgG, anti-guinea pig IgG, anti-mouse IgG; AlexaFluor 594/546 anti-mouse IgM; AlexaFluor 647 anti-rat IgG, anti-mouse IgG, anti-rabbit IgG, anti-guinea pig IgG; AlexaFluor 647 plus anti-mouse, anti-rabbit; AlexaFluor 488 plus anti-mouse, anti-rabbit), and AlexaFluor 405 anti-Guinea Pig. All secondary antibodies were used at 1:200 dilution.
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2

Expressing Pore-Forming Toxin in E. coli

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Plasmid allowing the expression of PFO in E. coli was kindly offered by Daniel Portnoy (DP-4167) [42 (link)]. Plasmid GFPNMHCIIA was a gift from Robert Adelstein through Addgene (#11347) [43 (link)], plasmid tdTomato-F-Tractin [44 (link)] was kindly offered by John Hammer (NIH, Bethesda, MD, USA), and plasmid pUBC eGFP-KDEL was a gift from François-Xavier Campbell-Valois [45 (link)]. The following antibodies were used at 1/200 for immunofluorescence microscopy (IF): rabbit anti-NMHCIIA (Sigma, St Louis, MO, USA), mouse anti-NMHCIIA (Abcam, Cambridge, UK), and mouse anti-KDEL (Abcam, Cambridge, UK). Secondary antibodies were used at 1/200: goat anti-rabbit Alexa Fluor 488 (Invitrogen, Waltham, MA, USA) and goat anti-mouse Cy3 (Jackson ImmunoResearch, West Grove, PA, USA). For IF, F-actin was labeled with rhodamine phalloidin (Invitrogen, Waltham, MA, USA) and the PM with FITC-conjugated WGA (Sigma, St Louis, MO, USA) that recognizes sialic acid and N-acetylglucosaminyl sugar residues at the PM.
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3

Immunostaining Protocols for Subcellular Markers

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Immunostainings were performed using standard protocols. The following primary antibodies were used: rabbit anti-SKTL at 1:20000 (Claret et al., 2014 (link)); mouse anti-Myc 9E10 (Santa Cruz) at 1:250; rabbit anti-RAB11 at 1:8000 (Nakamura); rabbit anti-RAB5 at 1:50 (Marcos Gonzalez-Gaitan); guinea pig anti-HRS at 1:500 (H. Bellen); mouse anti-KDEL at 1:300 (abcam 10C3, RRID: AB_298945); rabbit anti-NUF at 1:500; mouse anti-spNF at 1:50 (Abdu Uri); rabbit anti-Syntaxin16 at 1:1000 (R.Leborgne); rabbit anti-PKC (Santa Cruz) at 1:1000; mouse anti-HTS (Hybridoma, RRID: AB_528289) at 1:10; mouse anti-ß-Gal (Promega) at 1:250; rabbit anti-Staufen at 1:200. F-actin was visualised after staining with rhodamine-phalloidin (RRID: AB_2572408) or Alexa488-phalloidin (RRID: AB_2315147; life technology) at 1:200. Alexa594-WGA (Molecular probes) was used at 1:100 to stain nuclear membrane. Images were obtained with a ZEISS LSM700 confocal microscope and a Leica TCS-SP5 AOBS inverted scanning microscope.
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4

Immunoblotting and Immunocytochemistry Protocols

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mouse anti-cytochrome c (2 h, RT, 1:1000, clone 7HB8.2C12; BD Pharmingen, Franklin Lakes, NJ, USA), rabbit anti-TOM20 (1:200; Santa Cruz, Dallas, TX, USA), mouse β-tubulin (2 h, RT, 1:1000 in immunocytochemistry (IHC) and in western blots, clone TUB2.1, Sigma Aldrich), mouse anti-DRP1 (2 h, RT, 1:1000 in IHC and western blot; BD Bioscience, Franklin Lakes, NJ, USA) for Figure 3a/c and Supplementary Figures S3A–C, mouse anti-DRP1 (2 h, RT, 1:800; BD Bioscience) for Figure 3d, rabbit anti-p-DRP1 (1:500; Cell Signalling, Danvers, MA, USA), mouse anti-actin (1:1000; MP Biomedicals, Santa Ana, CA, USA), mouse anti-KDEL (o/n, 4 °C, 1:500; Abcam, Cambridge, UK), mouse anti-PDI (o/n, 4 °C, 1:1000; Enzo Life Sciences, Lörrach, Germany), rabbit anti-GM130 (o/n, 4 °C, 1:250; Abcam), mouse anti-giantin (o/n, 4 °C, 1:1000; Enzo Life Sciences). Generation of rabbit anti-COXII (1:1000) has been described before.22 (link) Alexa Fluor 488-conjugated phalloidin (1:500; Invitrogen) was used to visualize F-actin.
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5

Western Blot Analysis of CrPV Proteins

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Equal amounts of S2 protein lysates were resolved on a 12% SDS-PAGE gel and then transferred to a polyvinylidene difluoride Immobilon-FL membrane (Millipore). Membranes were blocked for 30 min at room temperature with 5% skim milk in TBST (50 mM Tris, 150 mM NaCl, 1% Tween-20, pH 7.4). Blots were incubated for 1 h at room temperature with the following antibodies: CrPV ORF1 (raised against CrPV RdRp) rabbit polyclonal (1:10 000), CrPV ORF2 (raised against CrPV VP2) rabbit polyclonal (1:10 000) (33 (link)), mouse anti-tubulin (1:1000; Santa Cruz), mouse anti-KDEL (1:1000;), or mouse anti-cytochrome C (1:1000; AbCam). Membranes were washed three times with TBST and incubated with either goat anti-rabbit IgG-HRP (1:20,000; GE Healthcare), goat anti-mouse IgG-HRP (1:5000; Santa Cruz), IRDye 800CW goat anti-mouse (1:10 000; Li-Cor Biosciences), or IRDye 800CW goat anti-rabbit (1:20 000; Li-Cor Biosciences) for 1 h at room temperature. An Odyssey imager (Li-Cor Biosciences) or enhanced chemiluminescence (Thermo) were used for detection.
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