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16 protocols using envision method

1

Immunohistochemical Analysis of EphA3 and AR

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The tissue sections were incubated with a mouse monoclonal antibody against EphA3 (Ab54623; Abcam, Cambridge, MA, USA) used at a 1:200 dilution, the AR mouse monoclonal antibody (441) (sc‐7305; Santa Cruz Biotechnology, Inc, Santa Cruz, CA, USA) used at a 1:100 dilution. Formalin‐fixed paraffin‐embedded tissues from PCa and the corresponding adjacent normal prostate tissues (at least 1.5 cm away from the tumor) were investigated from 64 patients. The EnVisionTM method (Dako, Glostrup, Denmark) was used for the immunohistochemical staining. Sections (5 μm) of a paraffin‐embedded tissue block were rehydrated by sequential immersion in graded ethanol solutions. Endogenous peroxidase activity was blocked with 3% hydrogen peroxide at room temperature for half an hour, and antigen retrieval was performed in citrate buffer at 100°C for 30 minutes. Then, the sections incubated in 10% normal goat serum for 5 minutes and with all monoclonal antibody anti‐EphA3 and AR antibody at 4°C overnight. Human gastric carcinoma tissue was used as a positive control sample for EphA3 expression and prostate tissue for AR expression. Phosphate‐buffered saline (PBS) was used instead of the primary antibody as the negative control.
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2

Immunohistochemistry and Immunofluorescence Protocols

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For immunohistochenistry, all tissue chip slides were dewaxed and rehydrated. The slides were then incubated in 0.3% H2O2 in methanol for 30 min to block endogenous peroxidase activity. Antigens were retrieved with 10 mmol/L sodium citrate (pH 6) for 5 min in a pressure cooker. The slides were then incubated with the selected antibody at 4 °C overnight. The slides without treatment of the primary antibody served as negative controls. The slides were developed with an EnVisionTM method (DAKO, Capinteria, CA, USA), visualized using the diaminobenzidine solution, and then lightly counterstained with hematoxylin (H9627, Sigma). All studies involving human subjects were approved by Army Medical University.
For immunofluorescent staining, cell slides were incubated with different primary antibodies, and were subsequently incubated with secondary antibodies. Nuclei were counterstained with DAPI. Images were obtained by confocal laser-scanning microscopy using a LSM780 laser scanning confocal microscope (ZEISS, Germany). To perform image-based analysis for autophagy, cells were infected with the tandem GFP-RFP-LC3 adenovirus for 24 h, and then the cells were treated and imaged for GFP and RFP by using confocal fluorescence microscopy.
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3

Immunohistochemical Staining of B7-H4 in Tissue

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Immunohistochemical staining was performed using the two-step EnVision method (Dako, Glostrup, Denmark). Paraffin-embedded tissues were cut into 5-μm serial sections, transferred onto adhesive slides, and dried at 65°C for 2 hours. The sections were deparaffinized with xylene and rehydrated through graded alcohols. Endogenous peroxidase activity was blocked with 0.3% hydrogen peroxide solution for 30 minutes at room temperature and antigen retrieval was performed at 100°C for 30 minutes in citrate buffer (10 mmol/L; pH 6.0). After washing three times with PBS at 5 minutes each time, the sections were incubated with 10% normal goat serum to block nonspecific binding. Then, the sections were incubated with rabbit anti-human B7-H4 monoclonal antibody (1:400; clone number EP1165; Abcam, Cambridge, MA, USA) at 4°C overnight, followed by immunodetection using the Dako EnVision detection system (K5007). The slides were counterstained with Mayer's hematoxylin, dehydrated in graded alcohol, and mounted with a neutral resin. The negative control was performed by replacing the primary antibody with PBS. Human tonsil tissue was used as the positive control.
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Immunohistochemical Profiling of Cell Markers

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Immunohistochemistry (IHC) was carried out on sections of frozen tissue using the Envision method (Dako, CA, USA) and primary antibodies for CD105 and CD90; CD45; CD34 and CD99 (abcam). IHC staining was evaluated by two pathologists
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5

Immunohistochemical Analysis of Collagen X and Elastin in Tumor Stroma

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Four‐micron sections were cut from formalin‐fixed paraffin‐embedded (FFPE) tissue blocks, heated at 60 °C for 30 min, deparaffinized and rehydrated. These were then subjected to antigen retrieval by heating in epitope retrieval buffer in a 95 °C water bath for 45 min. The slides were incubated with either mouse monoclonal antibodies or rabbit polyclonal antibodies for 30 min at room temperature. Anti‐ColXα1 (1:50, Clone X53, eBioscience/Affymetrix, San Diego, CA, USA) and anti‐alpha elastin (1:200, polyclonal, Abcam, Cambridge, MA, USA) were used for immunohistochemistry (IHC). Immunoreactivity was detected using the DAKO EnVision method according to the manufacturer's recommended protocol. Peri‐ and intra‐tumoral stromal staining for ColXα1 and elastin were scored as 0, 1+, 2+, and 3+ as previous described 17; briefly, 0 for absent staining, 1+ for <5% stroma tissue, 2+ for 5–10% of stroma tissue, and 3+ for >10% of stroma tissue. All scoring was performed blinded to the diagnosis. Developing cartilage and cartilaginous tumors were used as positive controls while normal bone and breast tissue were used as negative controls. Cases with a ColXα1 score 0 and elastin score 1–3+ or vice versa were not considered as coexpression or discordant expression patterns.
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6

Immunohistochemical Analysis of Insulin

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The graft was paraffin-embedded after fixation with formalin. Sections of 4-μm thickness were stained with hematoxylin and eosin, and examined immunohistochemically with an anti-insulin antibody (AbD Serotec, Raleigh, NC, USA) by the EnVision method (Dako, Kyoto, Japan), according to the manufacturer’s instructions.
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7

Quantifying Immune Cell Populations in FFPE Tissue

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Serial 5 µm FFPE tissue (N = 100) sections were cut and stained using the Envision method (Dako; Glostrup, Denmark) and CD20 (clone L26), CD4 (clone 4b12), CD8 (clone C8-144B), CD68 (clone KP1), and CD1a (clone 010) antibodies (Dako, Glostrup, Denmark). Two of the authors (AG and CA) independently quantified the number of positive cells in 10 consecutive fields. Discordant results were discussed until a mutual consensus was reached. The cut-off points to stratify into high and low (ROC curves) were calculated.
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8

Immunohistochemical Profiling of Breast Tumors

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Prediluted antibodies for estrogen receptor (ER; clone EP1), progesterone receptor (PR; clone 636) and Ki67 (clone MIB-I) were obtained from Dako (Glostrup, Denmark). Sections were processed in a PT Module using Dako high pH buffer (Dako) for deparaffinization and antigen retrieval. Sections for the Ki-67 study were processed with Dako low pH buffer. All immunohistochemical stains were performed in an Autostainer Link using the EnVision method (Dako). HER2 overexpression was analyzed using the HercepTest assay (Dako). Tumors were classified as ER or PR positive when at least 1% of the tumor cells showed staining in the nuclei cells [29] (link). HER2 was considered overexpressed when a uniform intense (3 +) membrane staining was present in > 30% of invasive tumor cells [30] (link). The percentage of Ki67-stained nuclei was evaluated independently of the intensity and its positivity cutoff value was ≥ 20% [31] (link). Two pathologists independently evaluated all immunostainings, and discordant results were reviewed to reach an agreement.
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9

Histological Evaluation of Carotid and Coronary Arteries

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To investigate human common carotid arteries and the effect of coronary bare metal stents on human coronary arteries by histological and immunohistochemical examinations, 22 samples each that did not show aortitis syndrome and autoimmune disease were obtained at autopsy.
Resected tissues were fixed in 10% formalin and embedded in paraffin. The sections (3 µm) were stained with hematoxylin and eosin (H&E) and used for immunohistochemical examinations by the EnVision method (Dako Japan, Kyoto, Japan). Monoclonal anti-human CD68 (clone KP1, 1:100) and αSMA (clone 1A/4, 1:150) antibodies were obtained from Dako Japan, rabbit polyclonal antibodies to CCL22 (1:100) and monocyte chemoattractant protein (MCP)-1 (1:200) were obtained from Abcam (Tokyo, Japan), and monoclonal anti-human CD4 antibody (clone 4B12, undiluted) was obtained from Nichirei (Tokyo, Japan).
This investigation adhered to all the principles prescribed in the Declaration of Helsinki. The Ethics Committee of Experimentation, University of Occupational and Environmental Health, Japan, approved all procedures of the present study.
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10

Immunohistochemical Analysis of HSP90 and MVD in ACC

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To evaluate the expression levels of HSP90 and MVD in ACC, immunohistochemical analyses were performed using an EnVision method (DAKO, Glostrup, Denmark). Antigen retrieval was achieved by microwave at 750 W for 15 min, and the sections were incubated with 10% normal goat serum at room temperature for 10 min to block non-specific reactions. This was followed by washing with phosphate-buffered-saline (PBS) and incubation with polyclonal mouse anti-human HSP90 antibody (Abcam, Cambridge, MA, USA) diluted to 1:100 for 12 h at 4°C. CD34 was a monoclonal mouse anti-human antibody (Novocastra Laboratories, Ltd., Newcastle-Upon-Tyne, USA), diluted to 1:200. The positive controls were gastric carcinoma and colon carcinoma, with positive expression levels of HSP90 and CD34. PBS was used instead of the primary antibodies as a negative control. The localization of immunostaining was demonstrated by incubation with the EnVision-peroxidase system.
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