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6 protocols using alexa488 goat anti rabbit igg

1

Investigating Male Infertility Mechanisms

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Immunohistochemistry (IHC) analyses were employed to reveal the potential mechanism of male infertility and abnormality of spermatogenesis in GGNBP2 KO mice. A rabbit anti-PCNA antibody (AB18197, Abcam) and HRP-conjugated goat anti-rabbit IgG (AB182016, Abcam) were used to identify the DNA replication-related changes in the testis cells. The signals were visualized using a DAB Substrate Kit (ab64238, Abcam).
A rabbit anti-Sox9 antibody (AB5535, Millipore) and a goat anti-rabbit IgG-Alexa488 (ab150077, Abcam) were used to identify Sertoli cells, the cell nuclei were stained with DAPI.
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2

Visualizing STIM1-Orai1 Co-localization and NF-κB/p65 Translocation

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All cells were seeded on a cover slide coated with 0.01% Poly-L-Lysine (Trevigen, US). KYSE-150 cells were co-transfected with plasmids containing STIM1 fused with mOrange and Orai1 fused with GFP. After 36 h, the cells were treated with RP4010 or vehicle for 4 h followed by 10 µM TG to deplete ER Ca2+ stores and activate SOCE. Zeiss LSM 780 laser scanning confocal microscope with 63× objective (NA 1.4, Zeiss, Germany) was used to visualize the co-localization of STIM1 and Orai1. For NF-κB/p65 imaging, all cells were starved in medium containing 0.1% FBS for 24-hours. Cells were stimulated by addition of 10% FBS for 60 min. Vehicle control, 20 µM BTP-2, or 10 µM RP4010 were added into both the starvation and stimulation medium. Cells were fixed using 4% paraformaldehyde in PBS and permeabilized by 0.1% Triton X-100. After incubation with 10% goat serum blocking solution for 30 min, cells were incubated with the primary antibody, i.e. rabbit anti-NF-κB/p65 (1:50, Santa Cruz, # sc-109) at 4 °C overnight. A goat anti-rabbit IgG-Alexa 488 (Abcam, # ab150077) was used as secondary antibody and incubated with cells for 1 h at room temperature. Hoechst 33342 (Enzo, # ENZ52401) was used to stain nuclei. For NF-κB/p65 translocation study, DMi8 inverted fluorescent microscope with 40× objective (NA1.3, Leica, Germany) was used.
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3

Multicolor Flow Cytometry Analysis of SARS-CoV-2

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The following monoclonal antibodies were used: antigen-presenting cell (APC) eFluor780-conjugated mouse antihuman CD8 (SK1, eBioscience), fluorescein isothiocyanate–conjugated mouse antihuman CD3 (HIT3a), APC-conjugated mouse antihuman CD19 (4G7), phycoerythrin-conjugated mouse antihuman CD14 (63D3), Pacific Blue–conjugated mouse antihuman CD56 (5.1H11), PerCP Cy5.5-conjugated mouse antihuman CD4 (RPA-T4, Biolegend), rabbit anti–SARS-CoV-2 N protein (Sino Biological), and Alexa 488 goat antirabbit IgG (Abcam). For surface staining, 1 × 106 cells were stained with the indicated antibodies at 4°C. For SARS-CoV-2 N protein staining, cells were fixed and permeabilized using Cytofix/Cytoperm Solution (BD Biosciences) after washing and stained with the indicated antibodies. A LIVE/DEAD cell viability assay kit (Invitrogen) was used for gating live cells. Flow cytometric data were acquired using a FACSVerse and were analyzed using FlowJo software (Tree Star).
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4

Immunofluorescence Quantification of DNA Damage Markers

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Cells were seeded in 6-well plates or 12 mm circular coverslips in 12-well plates. After treatment with the corresponding compound, fresh media was aspirated and cell monolayers were washed with PBS for 5 min three times. Cells were fixed with 4% paraformaldehyde for 15 min at 4 °C and permeabilized with 0.1% Triton X-100 in PBS for 10 min at room temperature. Cells were rinsed with PBS three times, blocked with blocking solution (1% BSA, 10% goat serum in 0.1% PBS-Tween) for 1 h and stained with the primary antibody in blocking solution for 16 h at 4 °C. After PBS washing, cell monolayers were stained with the secondary antibody diluted in blocking buffer for 1 h at room temperature in darkness. Cell nuclei were stained with DAPI (Sigma-Aldrich) at a final concentration of 0.1 µg/mL for 15 min at RT. The primary antibodies targeted H2AX histone phosphorylation at Ser 139 (γ-H2AX; 1:200; Merck Millipore, Massachusetts, USA), ATM phosphorylation at Ser 1981 (1:200; Santa Cruz Biotechnology, Dallas, USA), DNA-PK phosphorylation at Ser 2056 (1:200; Abcam, Cambridge, UK), and Chk-1 phosphorylation at Ser 345 (1:50; Cell Signaling, Danvers, USA). The secondary antibodies were Alexa488 goat anti-mouse IgG (1:1000; Abcam) and Alexa488 goat anti-rabbit IgG (1:1000; Abcam). Fluorescence was quantified by high-content screening (INCell 2200, General Electrics, New York, USA).
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5

Immunofluorescence Analysis of FXR and BSEP

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HepG2 cells were cultured on 4 chamber glass bottom dishes (In vitro Scientific, Sunnyvale, CA) overnight prior to addition of compounds, and then treated either with 0.1% DMSO or GE (100 μM) for 24 h. Cells were washed thrice with PBS (pH 7.4), fixed with 4% paraformaldehyde and then incubated with polyclonal antibody FXR and BSEP for overnight at 4 °C. Alexa488 goat anti-rabbit IgG (Abcam, Cambridge, MA) was used as the secondary antibody for 1 h at room temperature in the dark, and nucleic DNA was stained with 1 μg mL−1 DAPI (4′-6-diamidino-2-phenylindole, Bioworld, St. Paul, MN). The fluorescent image was visualized using a 63× oil immersion objective with the Zeiss LSM 700 scanning laser confocal microscope and image software (Zen 2010, Carl Zeiss Micro Imaging GHBH, Jena, Germany).
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6

Microglial P2Y12 Receptor Immunostaining

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BV-2 microglial cells were prepared as described above and seeded on a glass cover slip in a 6-well plate (Corning, USA) for 24 h. For living cell immunostaining, cells were incubated with anti-P2Y12 (extracellular) rabbit antibody (1:500; Alomone, Israel) resolved in DMEM at 37°C for 1h, followed by washing with HBSS for three times. Then, cells were stained with Alexa-488 goat anti-rabbit IgG (1:500; Abcam, UK) at 37°C for 1h. After washing with HBSS for three times, images were obtained by 535 nm emission filter based on an Olympus IX51 inverted fluorescence microscope with 40× oil objective.
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