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Trizol buffer

Manufactured by Takara Bio
Sourced in Japan

TRIzol buffer is a solution used for the extraction and isolation of RNA from biological samples. It is a monophasic solution of phenol and guanidine isothiocyanate that effectively lyses cells and denatures proteins to release the RNA. The buffer maintains the integrity of the RNA during the extraction process.

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3 protocols using trizol buffer

1

Quantitative Analysis of GC Transcripts

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After being lysed with TRIzol buffer (#9109, Takara, Japan), total RNAs of GC tissues and cell lines were extracted and reverse transcribed into cDNA by using a Bestar™ qPCR RT kit (#2220, DBI Bioscience, China). qRT-PCR assay was carried out with BestarTM qPCR MasterMix (#2043, DBI Bioscience, China) on the ABI7300 system. The sequence of primers used in this study is shown in Table 1. Expression of miRNA was normalized to U6, and expression of mRNA was normalized to GAPDH.
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2

Dose-dependent RNA-seq of OVA-stimulated DCs

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On the sixth day, OVA solutions of different doses were added to the DCs taken from mouse bone marrow, and the concentration of OVA in each hole was 0, 10, 100, and 10,000μg /ml, respectively. Three samples were tested for each group, and the culture lasted for 24 hours. After the collection of suspension cells, the cells, in each group, were separated and resuscitated in 0.5ml Trizol buffer (Takara, Dalian, China). RNA-seq was performed (Wuhan Kangce Co., LTD., China). Trizol extraction is a reliable method for obtaining high-quality total RNA. RNA-seq library was constructed by Illumina TruSeq RNA Sample Prep Kit version 2 (Illumina, San Diego, CA) and RNA was sequenced by Illumina HiSEquation 2000 platform (Illumina). Intergroup analysis: 10-0 DCs (10 DCs group compare with 0 DCs group), 100-0 DCs (100 DCs group compare with 0 DCs group), 10000-0 DCs (1000 DCs group compare with 0 DCs group).
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3

Quantitative Analysis of Thyroid Cancer Biomarkers

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Total RNAs of thyroid cancer tissues and the treated BCPAP cells were extracted by using TRIzol buffer (#9109, Takara, Japan). cDNA was synthesized with the Reverse Transcription kit (Takara, Japan). qRT-PCR assay was carried out with BestarTM qPCR Master Mix (#2043, DBI Bioscience, China) on ABI7300 system. The sequence of primers used in this study is shown in Table 1. The relative expression levels were analyzed using the 2−ΔΔCt method [27 (link)].

The sequences of primers for RT-qPCR assay

GenePrimer sequences
GAPDH

Forward: 5′-TGTTCGTCATGGGTGTGAAC-3′

Reverse: 5′-ATGGCATGGACTGTGGTCAT-3′

hsa_circ_0011385

Forward: 5′-TGACAACAATGAGCCCTACA-3′

Reverse: 5′-TTTCCTTGGCACTATACTGG-3′

miR-361-3p

Forward:5′-ACACTCCAGCTGGGTCCCCCAGGTGTGATTCTG-3′

Reverse:5′-CTCAACTGGTGTCGTGGAGTCGGCAATTCAGTTGAGAAATCAGA -3′

U6

Forward: 5′-CGCTTCACGAATTTGCGTGTCAT-3′

Reverse: 5′-GCTTCGGCAGCACATATACTAAAAT-3′

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