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3 protocols using nitrocellulose membrane

1

Quantitative Protein Analysis of Cellular Stress Pathways

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Cells were harvested 72h after treatment and centrifuged at 500g for 5 min. media and trypsin was eluted and cells were resuspended in 50–100ul of RIPA buffer. A Pierce BCA protein assay kit (Thermo Scientific, Waltham, MA) was used according to manufacturer’s protocol to quantitate total protein in each sample. 20µg of protein sample was resolved using a SDS-page 15% acrylamide-bis gel and transferred to a nitrocellulose membrane (Advansta, San Jose, CA). Membrane was immunostained using rabbit polyclonal anti-survivin (NB500-201, NOVUS Biologicals, 1:1000) for detection of all survivin isoforms, mouse monoclonal anti-p53 (1:1000) (DO-1, sc126, Santa Cruz Biotech), mouse monoclonal anti-YY1 (1:1000) (H-10, sc-7341 Santa Cruz Biotech), rabbit polyclonal anti-sp1 (1:1000) (PEP-2 sc59, Santa Cruz Biotech) and loading controls rabbit monoclonal anti-β-actin (1:5000) (D6A8, Cell Signaling) and mouse monoclonal anti-GAPDH (1:1000) (O411, sc-47724, Santa Cruz Biotech). Dylight 800 Goat-anti-mouse IGG (1:20000) (SA535521, Invitrogen), and goat-anti-rabbit IGG antibodies (1:20000) (SA5-35571, Thermo Scientific) were used for secondary stain and quantitation via Odessey CL-x (LI-COR Lincoln, NE).
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2

Protein Expression and Quantification

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Cells were lysed using RIPA buffer (Thermo Fisher Scientific) containing cOmplete, Mini, EDTA-free protease inhibitor (Sigma-Aldrich). Protein concentration was determined by BCA Protein Assay kit (Thermo Fisher Scientific). 10 µg/sample with 4x Laemmli Buffer (Bio-Rad, Hercules, CA, USA) containing β-mercaptoethanol was resolved in 20% Mini-PROTEAN TGX Gel (Witec AG, Sursee, Switzerland). PNGase treatments have been performed according to the manufacturer’s protocol (New England BioLabs, Frankfurt, Germany). Gels were transblotted on nitrocellulose membrane (Advansta) using eBlot L1 (GenScript, Piscataway, NJ, USA). Membranes were blocked and stained with primary antibody overnight in 5% nonfat dry milk in 0.1% phosphate-buffered saline Tween, visualized with horseradish peroxidase (HRP)-conjugated secondary antibody using WesternBright Quantum (Advansta Corporation, Menlo Park, CA, USA) and imaged by Fusion FX 7 Imaging System (Vilber Lourmat, Eberhardzell, Germany). Antibodies used are rabbit anti-ACE2 (1:500, ab15348, Abcam, Cambridge, UK), rabbit anti-ACE2 (1:1000, HPA000288, Sigma-Aldrich), rabbit anti-TMPRSS2 (1:1000, ab92323, Abcam), rabbit anti-NRP1 (1:50, HPA030278, Sigma-Aldrich), HRP-conjugated anti-rabbit (1:10000, 11-035-003, Jackson), and HRP-conjugated anti β-actin (1:25000, ab49900, Abcam).
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3

Western Blot Quantification of Protein Levels

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Equal amounts of cellular lysates (20 μg/lane) that were extracted in RIPA buffer were loaded on a gradient 4-20% SDS-PAGE, and proteins were separated by electrophoresis and transferred onto a nitrocellulose membrane (Advansta, San Jose, CA, USA). Block-Chemi (Advansta) reagent served to block the membranes for 1 hour. Then the primary antibodies goat anti-EMMPRIN (R&D systems, diluted 1:1000), mouse anti-TRAF6 antibody (Santa Cruz Biotechnology, Dallas, TX, USA, diluted 1:500) or mouse anti-β-actin (ProteinTech, Rosemont, IL, USA, diluted 1:10,000) in blocking solution were added for overnight incubation at 4°C, following 3 washes in TBST buffer (1xTris-buffered saline with 0.1% Tween 20). Then the HRP-conjugated secondary antibodies donkey anti-goat IgG or goat-anti-mouse IgG (Jackson ImmunoResearch Labs, West Grove, PA, USA, diluted 1:5,000) was incubated for 1 hour, and after three more washes, the membranes were incubated with the WesternBright ECL HRP substrate (Advansta). The protein bands were visualized using the Omega Lum G imaging system (Aplegen, Pleasanton, CA, USA).
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