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8 protocols using anti gapdh

1

Western Blot Analysis of Cellular Proteins

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Cells were washed with PBS, collected, and lysed on ice for 30 min with modified Radioimmune Precipitation Assay (RIPA) Buffer (Applygen) containing a protease inhibitor cocktail (Amresco). Cell lysates were then centrifuged for 15 min at 12,000 × rpm and 4°C. The supernatant was collected, and the protein concentration was measured using the BCA Protein Assay Reagent (Pierce). Total protein (30-80 μg) was subjected to 10–15% sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS–PAGE) and was transferred to nitrocellulose membranes (Millipore). After blocking in 5% non-fat dry milk in TBST (10 mM Tris-Cl, pH 7.5, 150 mM NaCl, 0.05% Tween20), the membranes were incubated with primary antibodies overnight at 4°C. After washing in TBST buffer, membranes were incubated for 1 h in the dark with the appropriate IRDye TM 800-conjugated secondary antibodies (Thermo) in TBST/5% non-fat milk. Signals were detected on an Odyssey Infrared Imager (LI-COR Bioscience) after washing.
The following antibodies were used for the Western blot analysis: anti-SIRT6 (Abcam, CST), anti-Multi Ubiquitin (MBL), anti-FLAG (Sigma), anti-Myc (MBL), anti-p27 (MBL, Santa), anti-GAPDH (Tianjin Sungene Biotech Co., Ltd.), anti-β-TUBULIN (Santa), anti-p21 (MBL), anti-p53 (Santa), anti-p16 (Santa), anti-PTEN (Santa), anti-acetylated lysine (CST).
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2

Protein Expression Analysis by Western Blot

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The protein was separated by 1×sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE). We transferred the protein to 0.22 μm PVDF membrane by using wet transfer. After being blocked in 8% non-fat milk overnight, the membrane were incubated by primary antibodies including anti-Pcna (1:1000, Mouse IgG, Cell Signaling Technology), anti-C-Myc (1:1000, Rabbit IgG, Cell Signaling Technology), anti-P53 (1:500, Rabbit IgG, Cell Signaling Technology), anti-caspase3 (1:500, Rabbit IgG, Beijing Biosynthesis Biotechnology) and anti-β-tublin (1:1000, Mouse IgG, Sino Biological), anti-Sirt1 (1:500, Rabbit IgG, Sangon Biotech), anti-A-β-catenin (1:1000, Rabbit IgG, Abcam), anti-PDX1 (1:1000, Rabbit IgG, Sangon Biotech), anti-β-catenin (1:500, Mouse IgG, Santa Cruz), anti-Acetyl-β-catenin (lys49) (1:1000, Rabbit IgG, Cell Signaling Technology), anti-GAPDH (1:1000, Mouse IgG, Tianjin Sungene Biotech) at 4°C for 12 h. Horse-radish peroxidase-conjugated anti-rabbit and anti-mouse (1:1000, Beyotime) treated the membrane at 37°C for 1 h. The blots were viewed and analyzed by Tanon-4200 (Shanghai Tianneng Corporation, China).
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3

Macrophage Signaling Pathway Analysis

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Macrophages (5 × 105 cells/mL) were stimulated with various doses of ES (0.1 μg/mL, 1 μg/mL, and 10 μg/mL), LPS (100 ng/mL), and Pam3CSK4 (4 μg/mL) for different time points. The treated cells were washed twice with PBS and then lysed for 30 min on ice in a RIPA solution containing a protease inhibitor cocktail and phosphatase inhibitors (Sigma, USA). The expression of proteins in the cell lysates were examined using anti-NF-κB phospho-p65, anti-phospho-JNK, anti-phospho-p38, and anti-phospho-ERK1/2 antibodies (Cell signaling technology, USA). Anti-GAPDH (Sungene Biotech, China) was used as an internal control. Statistical analysis was performed for band intensities and evaluated using image J (NIH, USA).
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4

Characterization of GLUL-mediated regulation of N-Cadherin

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The shRNA targeting human GLUL mRNA (5′-GACAATGCCCGACGTCTAA-3′) was cloned into pLKO.1-GFP lentiviral vector. Full-length of GLUL-WT/or R324C, N-Cadherin and deletion mutants were cloned into pDest27-GST or pCDH-Neo-Venus/Dest vectors as previously described28 (link). Anti-GLUL (Cat#D122427) and anti-GFP (Cat#D110008) antibodies were purchased from Sangon Biotech (Shanghai, China). Anti-N-Cadherin (Cat#610920), anti-β-Catenin (Cat#610154), anti-c-Myc (Cat#551102) and anti-Cyclin D1 (Cat#514181) antibodies were purchased from BD Bioscience (NJ, USA). Anti-Vimentin (Cat#5741) antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA). Anti-GST (Cat#SC-459) and anti-HA (Cat#SC-7392) antibodies were purchased from Santa Cruz Biotechnology (CA, USA). Anti-Flag (Cat#F7452) antibody was purchased from Sigma–Aldrich (St. Louis, MO, USA). Anti-GAPDH (Cat#KM9002T), anti-β-actin (Cat#KM9001T) and anti-Tubulin (Cat#KM9007T) antibodies were purchased from Sungene Biotech (Tianjin, China).
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5

Western Blot Analysis of Protein Markers

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Western blotting was performed as previously described [17 (link)]. The primary antibodies used were as follows: anti-PTEN (Abcam Cat# ab32199, RRID:AB_777535; Cell Signaling Technology Cat# 9188, RRID:AB_2253290; Proteintech Cat# 60300-1-Ig, RRID:AB_2881415), anti-NGAL (Abcam Cat# ab63929, RRID:AB_1140965), anti-FN (Sigma-Aldrich Cat# F3648, RRID:AB_476976), anti-Col-I (Boster Biological Technology Cat# BA0325, RRID:AB_2891224), anti-α-SMA (Sigma-Aldrich Cat# A5228, RRID:AB_262054), anti-PCNA (Proteintech Cat# Biotin-60097, RRID:AB_2883063), anti-E-Cadherin (Cell Signaling Technology Cat# 14472, RRID:AB_2728770), anti-Flag (Proteintech Cat# 20543-1-AP, RRID:AB_11232216), anti-CHMP2A (Proteintech Cat# 10477-1-AP, RRID:AB_2079470), anti-SQSTM1/p62 (Cell Signaling Technology Cat# 39749, RRID:AB_2799160), anti-LC3B (Cell Signaling Technology Cat# 83506, RRID:AB_2800018), anti-LAMP1 (Cell Signaling Technology Cat# 15665, RRID:AB_2798750), anti-β-tubulin (Tianjin Sungene Biotech Cat# KM9003, RRID:AB_2744678), and anti-GAPDH (Tianjin Sungene Biotech Cat# KM9002, RRID:AB_2721026). Western blotting was performed at least three times, independently. Quantification was performed by measuring the signal intensity using the software ImageJ (National Institutes of Health).
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6

Antibody Sources for Viral Protein Detection

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Abs against ICP8, ICP0, and ICP4 were purchased from Abcam (Cambridge, UK). Abs against US11 have been described elsewhere.39 (link) Abs against γ34.5 and ICP27 were kind gifts from Bernard Roizman (University of Chicago, Chicago, IL, USA). Additional Abs used in this study were anti-GAPDH (Sungene Biotech, Tianjin, China), anti-CNTFR (Abcam), and FLAG Tag Mouse monoclonal Ab (Beyotime, Shanghai, China).
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7

Western Blot Analysis of Key Proteins

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The western blotting protocols followed previous study (Wei et al., 2016 (link)). The primary antibodies used included: anti-Dmrt1 (1∶500; Santa Cruz Biotechnology, USA), anti-TLR2 (1∶200; Santa Cruz Biotechnology, USA), anti-TLR5 (1∶200; Santa Cruz Biotechnology, USA), anti-TLR4 (1∶200; Santa Cruz Biotechnology, USA), anti-NF-κB (1∶200; Santa Cruz Biotechnology, USA), anti-TNFα (1∶100; Proteintech Group, China), anti-IL-6 (1∶100; Proteintech Group, China), anti-PCNA (1∶200; Boster, China), anti-inositol-requiring enzyme-1 (IRE1) (Biosynthesis Biotechnology, China), anti-Chop (Biosynthesis Biotechnology, China), anti-p53 (1∶200; Wanlei Biotechnology, China), anti-cyclin-D1 (1∶200; Boster, China), anti-Plzf (1∶300; Sino Biological, China), anti-caspase-3 (Biosynthesis Biotechnology, China), and anti-GAPDH (Tianjin Sungene Biotech, China). Band intensities from three independent experiments were determined by densitometry using NIH ImageJ and the significance of differences was determined by Student’s t-test.
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8

Protein Expression Analysis by Western Blotting

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Western blotting analysis was performed according to a standard method, as described previously [44 (link)], using anti–SMAD3, anti–Phospho-Smad3 (Ser423/425), anti–p21 Waf1/Cip1 and anti–c-MYC (Cell Signaling Tech, USA). Following the initial western blot assay, the membranes were stripped and re-probed with anti-GAPDH (Tianjin Sungene Biotech Co., China) as a protein loading control.
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