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Anti irf7

Manufactured by Santa Cruz Biotechnology
Sourced in Japan

Anti-IRF7 is a laboratory reagent used in research applications. It is an antibody that specifically binds to the Interferon Regulatory Factor 7 (IRF7) protein, which is a transcription factor involved in the regulation of genes related to the interferon response. The core function of Anti-IRF7 is to detect and quantify the presence of IRF7 in biological samples.

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8 protocols using anti irf7

1

ChIP Assay Protocol for IRF Transcription Factors

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ChIP assays were performed with SimpleChIP Enzymatic Chromatin IP Kit (Cell Signaling Technology Japan, Tokyo, Japan) with anti-IRF1 (Santa Cruz Biotechnology), anti-IRF3(Santa Cruz Biotechnology), anti-IRF5 (Abcam), anti-IRF7 (Santa Cruz Biotechnology), anti-IRF8 (Santa Cruz Biotechnology), anti-IRF9 (Santa Cruz Biotechnology), normal goat IgG (Abcam) and normal rabbit IgG (Cell Signaling Technology) antibodies. ChIP signals were quantified by quantitative PCR analysis with a 7500 real-time PCR system (Applied Biosystems). Values obtained for immunoprecipitated samples (percent (%) input DNA) were normalized to values for respective normal IgG. The specific primer pairs for the Irf5 promoter region and P2rx4 promoter region, respectively, are described below.
Region 1: 5′-ATTTCTCAGGCCCTGTCTAAAGTG-3′ (forward),
5′-GGCACAGAGAGAGTTAGAGGAAGA-3′ (reverse)
Region 2: 5′-TATGGAGTCTTTCTGCACCCTGT-3′ (forward),
5′-TTCCAAGAACGAAGAGTCCCCTA-3′ (reverse)
ISRE-1: 5′-GCTGGCTCGTTTCAAGAATATT-3′ (forward),
5′-CGTACCCTGTAGCCGTCTATT-3′ (reverse)
ISRE-2: 5′-TCTACAGCCTGAAAGTCTATCATTG-3′ (forward),
5′-AAGGAATCTGAGAGGTACACACTG-3′ (reverse)
ISRE-3: 5′-GATAGGGAGAGGCTCGTTCA-3′ (forward),
5′-TAAAAGCTCGGGACCTGGAA-3′ (reverse)
ISRE-4: 5′-TACTGACCTGCCTCTTTTAAGGACA-3′ (forward),
5′-CGGAAAGAACTTTGAACCTTGAG-3′ (reverse)
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2

Regulation of IRF7 Signaling Pathway

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CpGA (ODN2116), CpGB (ODN2006) and R848 were purchased from Invivogen. The following antibodies were used for immunoblotting: anti-MYC, anti-IRF7, and anti-IRAK1 (Santa Cruz Biotech); anti-TLR7 (Abcam); anti-MyD88 and anti-TLR9 (eBioscience); anti-STAT1, anti-NCOR2, anti-HDAC1, anti-HDAC2, anti-HDAC3, anti-HDAC4, anti-HDAC6, anti-HDAC7, anti-pIKKα/β, anti-pIκBα, anti-IκBα, anti-pJNK, anti-pp38, anti-TBK1, anti-pTBK1 and anti-pERK (Cell Signaling Technologies); and anti-GAPDH (Sigma).
NE-PER Nuclear and Cytoplasmic Extraction Reagents (Pierce) was used to investigate nuclear translocation of IRF7 as per the manufacturer’s instructions. MYC inhibitor (c-Myc Inhibitor II - CAS 413611-93-5) was purchased from CalBiochem. HDAC inhibitors, valproic acid (VPA) was purchased from Invivogen.
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3

Immunophenotyping and Signaling Pathway Analysis

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Monoclonal antibodies (Abs), specific for cluster of differentiation (CD)1a, CD14, CD38, CD86, CD83, HLA-DR, CD40, IgG1, and IgG2a (BD Bioscience, San Diego, CA, USA), were directly conjugated to fluorescein isothiocyanate (FITC) or phycoerythrin (PE). To exclude dead cells from the analysis, Fixable Viability Dye eFluor®780 (FvDye) (eBioscience, San Diego, CA, USA) was used. For immunoblotting analysis, rabbit anti-STING (Cell Signaling, Danvers, MA, USA # 2775), anti-IRF3 (Santa Cruz, Santa Cruz, TX, USA # sc-9082), anti-IRF7 (Santa Cruz, # sc-9083), anti-STAT1 (BD Bioscience, # 610186), anti-phospho STAT1 (Cell Signaling Technology, Leiden, The Netherlands, # 7649), anti-STAT2 (BD Transduction Laboratories, # 610188), anti-phospho STAT2 (R&D Systems, Minneapolis, MN, USA, MAB2890), mouse anti-actin (Sigma-Aldrich, St. Louis, MO, USA #A0483), and horseradish peroxidase-conjugated secondary antibody anti mouse (Santa Cruz, # sc-2005) and anti rabbit (Santa Cruz, # sc-2004) were used. For phagocytosis and phagosomal acidification experiments, cytochalasin D 5 μM (Sigma-Aldrich, # C8723) and chloroquine 2 μM (Sigma-Aldrich, # C6628) were used.
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4

Autophagy Regulation in Viral Immunity

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The reagents used in this study were rapamycin and hydroxychloroquine (HCQ) (Sigma-Aldrich, St. Louis, MO, USA); 3-Methyladenine (3-MA), Torine 1 and bafilomycin A1 (BAF-A1) (Merck Millipore, Burlington, MA, USA). The antibodies used were anti-RIG-I, anti-MAVS, anti-phospho- TANK-binding kinase 1 (anti-phospho-TBK1), anti-TBK1, anti-phospho-IFN regulatory factor 3 (anti-phospho-IRF3), anti-phospho-c-Jun (Ser73), anti-c-Jun, anti-phospho-NFκB p65 and anti-IκBα (Cell Signaling, Danvers, MA), anti-Tumor necrosis factor receptor-associated factor 6 (TRAF6), anti-IRF3, anti-IRF7, and anti-NFκB p65 (Santa Cruz Biotechnology, Santa Cruz, CA), anti-LC3B and anti-p62 (MBL, Nagoya, Japan), anti-FLAG tag, anti-V5 tag, anti-c-Myc tag, anti-GFP, anti-β-Actin and anti-Gapdh (ThermoFisher scientific). The anti-AiV VP1 antibody was described in our previous study 7 (link). dsRNA (polyI:C) was purchased from InvivoGen (San Diego, CA, USA). Turbofect transfection reagent (ThermoFisher Scientific) was used for transfection in cells.
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5

Immunoprecipitation of FLAG and IRF7/TRAF6

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For immunoprecipitation, cell lysates were prepared in RIPA buffer (Cell Signaling Technology) and precleared with Protein G Agarose (Millipore, Billerica, MA). The lysates were immunoprecipitated with the addition of protein G-Sepharose, the M2 FLAG antibody (Sigma-Aldrich, St. Louis, MO), anti-IRF7 or anti-TRAF6 (Santa Cruz, Dallas, TX), respectively, and the mixture was incubated with gentle shaking for 4 hours at 4 °C. The samples were resolved on SDS-PAGE, and underwent immunoblotting analysis using anti-HA (Sigma-Aldrich, St. Louis, MO) and the M2 FLAG antibody, respectively.
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6

Immunofluorescence Staining of Cells

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Cells were stimulated and fixed. Cells were cytospun on slides (Shandon Cytospin 2 Cat #59900102) and dried at RT. Slides were not mounted and shipped to the University of Washington for further processing and imaging. Following re-hydration in PBS, cells were blocked with 3% normal goat serum (Jackson ImmunoResearch). Primary antibody staining was performed with rabbit anti-STAT1 (Santa Cruz Biotechnology, sc-346), anti-IRF7 (Santa Cruz Biotechnology) or mouse anti-HCV Core (Thermo Scientific MAB1-080). Secondary antibody staining was performed with goat anti-rabbit or goat anti-mouse conjugated to AlexaFluor488 (Santa Cruz Biotechnology). Nuclei were stained with DAPI. Slides were mounted using ProLong Gold Anti-Fade Reagent (Invitrogen). Images were captured at 40x magnification using the EVOS FL Cell Imaging System (Invitrogen).
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7

Immunofluorescent Staining of Alzheimer's Mouse Brain

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Coronal brain sections (40 µm) of WT mice or APPswe/PSEN1dE9 mice were fixed in 4% PFA and blocked with 5% fetal bovine serum (FBS) plus 2% goat serum in PBS for 1 h, followed by incubation at 4°C overnight with primary antibodies. The sections were then washed and incubated for 1 h with corresponding fluorescence‐conjugated secondary antibodies (Jackson ImmunoResearch). Vectashield mounting medium containing DAPI (Vector Laboratory) was used to coverslip the slides. Fluorescent signals were examined using Nikon Eclipse T300 fluorescence microscope. The primary monoclonal antibodies used here include anti‐CD31 (Novus Biological, NB600‐1475, 1:100 dilution), anti‐LPR1 (Santa Cruz Biotech, sc‐57353, 1:50 dilution), and anti‐Irf7 (Santa Cruz Biotech, sc‐74471, 1:50 dilution).
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8

Plasmids, Recombinant Proteins, and Antibodies

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Plasmids, recombinant proteins and antibodies DDX3 and K7 expression constructs (in pCMV-myc, pCMV-Ha or pHisParallel2) have been described in our previous studies [3, (link)4] (link). IKKα-Flag and NIK-Flag were provided by Prof. Luke O'Neill (Trinity College Dublin), and Flag-IRF7 was provided by Prof. Kate Fitzgerald (University of Massachusetts). GST (glutathione-S-transferase)-IRF7 (aa 468-503) peptides and constructs were kindly provided by Prof. John Hiscott and Dr Qiang Sun (McGill University, Montreal). Purified recombinant protein kinase GST-IKKα was purchased from Millipore and recombinant GST-NIK was purchased from Proqinase (Freiburg, Germany). The antibodies used were anti-Flag-M2 mAb (Sigma-Aldrich), anti-Myc mAb clone 9E10 (Sigma-Aldrich), anti-HA (hemagglutinin) mAb (Covance), anti-DDX3 (Santa Cruz or Bethyl Laboratories), anti-p52/p100 (Millipore), anti-IRF7 (Santa Cruz), anti-IKKα, anti-phospho-Ser176/180-IKKα, anti-phospho-Ser 866/ 870-p100, and anti-phospho-Ser471/472-IRF7 (all Cell Signaling Technology), anti-His (Sigma-Aldrich), and anti-GST (Promega). Secondary AlexaFluor488-and AlexaFluor594-coupled antibodies were purchased from Invivogen.
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