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5 protocols using α tubulin ab7291

1

Western Blot Analysis of Protein Expression

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Cells were lysed with RIPA buffer (Beyotime, Shanghai, China). The protein concentration was quantified using BCA protein assay kit (Beyotime). The following steps were done as mentioned in previous study
[24] (link). Immunoreactive bands were revealed using BeyoECL Plus kit (Beyotime). The images were acquired by using Bio-Rad ChemiDoc™ XRS+System (Bio-Rad, Hercules, USA). Antibodies against the following proteins were used: QKI5 (13169-1-AP, 1:1000 dilution; Proteintech, Rosemont, USA), AKT1 (55230-1-AP, 1:1000 dilution; Sanying, Wuhan, China), β-actin (60008-1-Ig, 1:1000 dilution; Sanying), α-tubulin (ab7291, 1:1000 dilution; Abcam, Cambridge, UK). HRP-conjugated goat anti-rabbit IgG (AS1107, 1:1000 dilution; ASPEN, Wuhan, China) or goat anti-mouse IgG (AS1106, 1:1000 dilution; ASPEN) was used as the secondary antibody.
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2

Protein Separation and Detection via SDS-PAGE and Immunoblotting

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Sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and immunoblotting were carried out as previously described (Fisher, Wang, Wu, & Peng, 2014 (link)), using the following antibodies: KU80 (A302–627) and Sm-D3 (A303–954) from Bethyl Laboratories (Montgomery, TX); PARP1 (sc-74470), Sm-B/B’ (sc-271094), Sm-D1 (sc-166650), ATM (sc-377293), DNA-PKcs (sc-390849), GFP (sc-9996), β-actin (sc-47778) and γ-H2AX (sc-517348) from Santa Cruz Biotechnology (Dallas, TX); FEN1 (ab109132), H2B (ab1790–100) and α-tubulin (ab7291) from Abcam (Cambridge, MA); CHK1 (#2345), phospho-ATM (#13050) and γ-H2AX (#9718) from Cell Signaling Technology (Beverly, MA).
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3

Mitochondrial Proteome Analysis Protocol

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The rabbit polyclonal P-p70S6K (#9205), T-p70S6K (##2708), LC3B (#3868), SDHA (#11998), COXIV (#4850), MYC-tag (2272), Vimentin (#3932) and N-cadherin (#13116) antibodies were purchased from Cell Signaling Technology. The rabbit polyclonal CHCHD4 (HPA034688) antibody was purchased from Cambridge Biosciences. The rabbit polyclonal NDUFB10 (ab196019), NDUFS3 (ab110246), UQCRC2 (ab14745) and mouse monoclonal α-Tubulin (ab7291) and β-actin (ab6276) antibodies were purchased from Abcam. The goat anti-mouse IgG Alexa Fluor 568 (A11031, 1:1000) and goat anti-rabbit IgG Alexa Fluor 488 (A11034, 1:1000) were purchased from ThermoFisher Scientific. The rabbit anti-puromycin antibody was a gift from Stefan Marciniak (CIMR, Cambridge). Uniformly labelled 13C5-glutamine (CLM-1822-H-MPT-PK) was purchased from CK Isotopes. Rotenone, antimycin A, DAPI nitrotetrazolium blue, NADH, aspartate, l-lysine, l-arginine, l-lysine-13C6, 15N2 and l-arginine-13C6, 15N4 (Arg-10) were purchased from Sigma Aldrich. BAY 87-2243 was purchased from MedChemExpress.
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4

Western Blot Analysis of IGF-2 and Phospho-Akt

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Cultured cells and tumor samples were processed for western blot as previously described [10 (link)], except the membrane was incubated in 1 M DTT solution at room temperature for 5 min then washed with TBS-T three times before adding IGF-2 antibody. Phosphatase inhibitors (P2850, P5726, Millipore-Sigma, Burlington, MA, USA) were added to the lysis buffer for P-Akt. The antibodies used were IGF-2, 8H1, MA5-17096, 1:1000, ThermoFisher Scientific, Waltham, MA, USA, α-tubulin, Ab7291, 1:10,000, Abcam, Cambridge, UK, GAPDH, sc-47,724, 1:1000, Santa Cruz Biotechnology, Dallas, Texas, USA, Akt, 2938, P-Akt, 4058, 1:1000, secondary antibodies 7074 and 7076 S, 1:10,000, Cell Signaling Technology, Danvers, MA.
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5

Western Blot Analysis of Signaling Proteins

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For western blot analysis, 1 × 106 cells were lysed with RIPA buffer (08714-04, Nakalai Tesque). SDS sample buffer was added, and the mixture was incubated at 93 °C for 3 min. The extracted proteins were separated on Bollt 4–12%, Bis-Tris, 1.0 mm, Mini Protein Gel (NW04120BOX, Thermo Fisher Scientific) and blotted onto an Immobilon-P PVDF Membrane (IPVH00010, Merck) using a Mini PROTEAN Tetra Cell (Bio-Rad). The transferred membranes were incubated with the following primary antibodies: α-tubulin (ab7291, Abcam), pSMAD1/5/9 (9511, Cell Signaling Technology), pSMAD2 (3108, Cell Signaling Technology), pMAPK (4376, Cell Signaling Technology), pSTAT3 (9131, Cell Signaling Technology) and STAT3 (564533, BD Bioscience). The primary antibodies were detected with anti-rabbit IgG, HRP-linked antibodies (7074, Cell Signaling Technology) and anti-mouse IgG, HRP-linked antibodies (7076, Cell Signaling Technology), followed by detection using ECL Prime Western Blotting Detection Reagent (RPN2236, Amersham). Chemiluminescence images were acquired using the ImageQuant LAS 4000 (GE Healthcare) and Ambersham ImageQuant 800 (Cytiva) systems. Uncropped western blot images are shown in Supplementary Figs. 2 and 3.
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