The largest database of trusted experimental protocols

25 protocols using lumipulse

1

Construction and Characterization of Replication-Competent HBV Clone

Check if the same lab product or an alternative is used in the 5 most similar protocols
A replication-competent HBV clone with a 1.38-fold genome length was constructed by using the genome sequence of HBV.15 (link),44 (link) In this study, we used the HBV genotype C clone (accession number AB246344).15 (link),45 (link) This clone has the amino acid substitution G1896A, which prevents HBeAg production. The I97L substitution was introduced by site-directed PCR and fragment swapping.44 (link) Lipofectamine 3000 Reagent (catalog #L3000015; Thermo Fisher Scientific, Waltham, MA) was used for transfection of the HBV molecular clone plasmids. The transfected cells and HBV in the culture medium were harvested 1 week after transfection. The collected media were stored after passing through a 0.45-μm filter to remove cell debris. The intracellular and extracellular levels of HBsAg were measured by chemiluminescent enzyme immunoassay using commercial assay kits (Lumipulse; Fujirebio, Tokyo, Japan).39 (link) The intracellular and extracellular levels of HBcrAg consisting of 3 proteins (HBcAg consists of HBV particles, HBeAg, and a 22-kDa precore protein) encoded by the precore/core region were also measured by chemiluminescent enzyme immunoassay with commercial assay kits.46 (link)
+ Open protocol
+ Expand
2

Comprehensive CSF Biomarkers Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Non-centrifuged CSF were analysed for cell counts, and for EV RNA by either a multiplex PCR [17] (link) and/or a quantitative in-house PCR [18] (link) at the time for acute disease. All samples diagnosed by the multiplex PCR at the first stage, introduced in the routine diagnostics in April 2017, were reanalysed by the quantitative PCR for verification. Sensitivity of the multiplex PCR used in this study is reported to 89% for EV [17] (link). Patient CSF samples were stored non-centrifuged at -70 � C or -20 � C. CSF samples from control subjects were stored at -70 � C as part of a biobank. These stored samples were then used for further analyses.
For analysis of biomarkers of neurodamage, CSF were sent to the neurochemistry laboratory at Sahlgrenska University Hospital. All CSF samples from the patients and the control subjects were analysed on one occasion using one batch of reagents for the biomarkers Ab42, Ab40, S-100B, P-tau (phosphorylated at amino acid 181), T-tau, GFAP and NFL. Ab42, Ab40, P-tau, and T-tau concentrations were measured by Lumipulse (Fujirebio, Ghent, Belgium), as previously described [19] (link). S-100B concentration was measured using the ElecsysV R S100 assay on a cobas e601 instrument (Roche Diagnostics, Penzberg, Germany). GFAP and NFL concentrations were measured using in-house enzyme-linked immunosorbent assays (ELISAs) [11, 20] (link).
+ Open protocol
+ Expand
3

PIVKA-II Assay Protocols for Liver

Check if the same lab product or an alternative is used in the 5 most similar protocols
The serum PIVKA-II level was determined using commercially available kits Lumipulse PIVKA-II-N (Lumipulse assay, Fujirebio, Tokyo, Japan) and Elecsys PIVKA-II (Elecsys assay, Roche Diagnostics K.K., Tokyo, Japan). Both tests were conducted following the instruction manuals of each kit.
+ Open protocol
+ Expand
4

Biomarkers Processing and Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Blood samples were collected in 10-ml EDTA tubes and immediately transferred to our laboratory where they were centrifuged and aliquoted within 2 h after collection. CSF samples were collected on the same day of blood extraction and processed in polypropylene tubes following international recommendations [33 (link)]. All samples were processed and aliquoted within the first two hours after lumbar puncture. The plasma and CSF aliquots were stored at − 80 °C until analysis. pGFAP and pNfL concentrations were measured using the SR-X single molecule array. CSF AD core biomarkers (Aβ42, Aβ40, tTau and pTau181) were measured in the fully-automated platform Lumipulse (Fujirebio-Europe), and levels of CSF NfL (Uman Diagnostics) and CSF YKL-40 (MicroVue™, Quidel) were measured by ELISA according to previously reported methods [7 (link), 33 (link)]. All samples and calibration curves were measured in duplicate. Intra- and inter-assay coefficients of variations were 5.3% and 9.6%, respectively. The pre-analytical processing protocol for blood and CSF in the SPIN cohort has been described in detail [28 (link), 29 (link)].
+ Open protocol
+ Expand
5

Evaluation of Glucose Metabolism Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Blood samples were taken from the antecubital vein in the morning. We measured PG, hemoglobin A1c, insulin, and C-peptide levels. Enzymatic methods were used to assess PG (Glucose Assay Kit; Wako Pure Chemical Industries, Osaka, Japan). Serum insulin and HbA1c were measured by automated enzyme-linked immunosorbent assays (E-test TOSOH II; Tosoh, Tokyo, Japan) and high-performance liquid chromatography (HA-8180; Arkray, Tokyo, Japan), respectively. Serum C-peptide was measured using a chemiluminescent enzyme immunoassay (LUMIPULSE; Fujirebio, Tokyo, Japan). We calculated eGFR using the revised equation adjusted for the Japanese population52 (link). UACR, a marker for diabetic nephropathy, was also measured. The urinary albumin levels were measured using an immunoturbidimetric assay (SRL, Tokyo, Japan), and UACR was calculated by dividing the urinary albumin levels by the urinary creatinine concentration.
+ Open protocol
+ Expand
6

Quantitative HBV Biomarker Profiling

Check if the same lab product or an alternative is used in the 5 most similar protocols
The serum levels of HBsAg were quantified using a chemiluminescent enzyme immunoassay (CLEIA) with LUMIPULSE HBsAg-HQ (Fujirebio; cat. no. 296851). Hepatitis B e antigen (HBeAg) was assessed using a CLEIA by ARCHITECT (Abbott Pharmaceutical Co. Ltd.; cat. no. G06241R03). The HBV DNA levels were quantified using reverse transcription-quantitative (RT-q)PCR assays using Cobas TaqMan HBV Auto, according to the manufacturer's protocol (Roche Diagnostics). HBcrAg was tested using a CLEIA with LUMIPULSE (Fujirebio; cat. no. 294109). HBV genotypes were determined using the IMMUNIS HBV genotype EIA kit (Institute of Immunology; cat. no. 1A65).
+ Open protocol
+ Expand
7

Cerebrospinal Fluid Biomarkers for Alzheimer's

Check if the same lab product or an alternative is used in the 5 most similar protocols
CSF was obtained by lumbar puncture and collected in polypropylene tubes following international recommendations [17] (link). Samples were processed (centrifuged 2000 g at 4°C, during 10 min) and aliquoted into polypropylene tubes within the first two hours after lumbar puncture. Aliquots were then stored at -80°C until analysis. CSF levels of core AD biomarkers (Aβ1-42, Aβ1-40, tTau, and pTau181) were measured in the Lumipulse fully-automated platform using commercially available kits (Fujirebio Europe, Ghent, Belgium), as previously described and according to the provider's instructions [18, (link)19] (link).
Following the AT(N) classification system [20] (link), we used previously validated cutoffs [19] (link) for CSF Aβ1-42/Aβ1-40 as a marker of β amyloid deposition (A+ < 0.062), and CSF pTau181 (T+ > 63pg/ml) as a marker of Tau pathology, and we classified all participants as A+T+, A+T-, A-T+ or A-T-.
We used NfL in CSF as a marker of the (N) category. Levels were measured using a commercially available ELISA kit (NFlight, UmanDiagnostics, Umeå, Sweden,) as previously described [16, (link)21, (link)22] (link).
+ Open protocol
+ Expand
8

Comparative Evaluation of Thyroid Function Assays

Check if the same lab product or an alternative is used in the 5 most similar protocols
FT4 and FT3 measurements were undertaken as specified by manufacturers as follows: One-step immunoassay methods used: ADVIA CENTAUR XP®: Siemens Medical Solutions Diagnostics (reference range (RR) for FT4: 10.0–19.8 pmol/L and FT3: 3.5–6.5 pmol/L); ELECSYS E170: Roche Diagnostics (RR for FT4: 12.0–22.0 pmol/L and FT3: 3.1–6.8 pmol/L) and VITROS Eci: Ortho Clinical Diagnostics (RR for FT4: 8.9–20.3 pmol/L and FT3: 4.1–7.9 pmol/L). LUMIPULSE: Fujirebio (RR for FT4: 13.5–24.0 pmol/L and FT3: 2.7–6.7 pmol/L). Two-step immunoassay methods used: Wallac DELFIA: Perkin Elmer (RR for FT4: 9.0–20 pmol/L and FT3: 3.5–7.5 pmol/L); ARCHITECT c800: Abbott Ltd Diagnostics (RR for FT4: 8.0–21.0 pmol/L and FT3: 3.8–6.0 pmol/L) and ACCESS 2: Beckman Coulter. (RR for FT4: 6.3–14.0 pmol/L). FT4 measurements by three methods (Ortho VITROS Ec1, Fujirebio LUMIPULSE, Roche ELECSYS E170) were repeated in assay buffer supplemented with 2.5 mM sodium chloride.
+ Open protocol
+ Expand
9

Automated Cerebrospinal Fluid Biomarker Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cerebrospinal fluid was stored at −80° in participating biobanks following lumbar puncture. All participating biobanks used polypropylene primary tubes and samples were frozen at −80°C in polypropylene secondary tubes within maximal 48 h at 4°C. Samples were retrieved for this study and kept on dry ice until the time of measurements. Samples were thawed and aliquoted for measurements into certified polypropylene tubes immediately before measurement. Analysis was performed on a fully automated platform (FujiRebio LumiPulse) using dedicated ECLIA assay chemistry (FujiRebio©) according to the manufacturer’s protocols including calibration and controls. All analytes were measured within 2 days using single measurements. Predetermined coefficients of variations (CV) for this approach showed intra- and inter-assay variations of <4% for Aβ40, Aβ42, p-Tau, and 7% for t-tau across the whole measurement range. The reader, a board certified laboratory physician (FL), extracting the data was blinded to history, clinical diagnosis and other laboratory parameters of the study participants. The assay is approved and in routine clinical use at the University Hospital Schleswig-Holstein, Kiel.
+ Open protocol
+ Expand
10

Quantification of Platelet Tau Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Platelet tau was characterized using our novel WAN-GEL (Western Blot-native Agarose gel elution) model developed by us recently (Humpel, 2022 submitted) . Native Western Blots were performed as described above but directly after the gel run, different molecular weight bands were dissected with a scalpel with a size between 80 and 0 kDa related to the color molecular weight marker. For the elution, 2.5 mL sample vials (PE, 14 mm, Roth 5863.1) were used and 1 mL 4% agarose was pipetted at the bottom of the tubes and cooled. Then, the cut Western Blot bands were carefully placed on top of the hardened agarose. Next 1 mL 1% handwarm agarose was pipetted onto the extracted bands and cooled to harden. In the next step, the bottom of the vial was cut, and the tube closed with a Millicell culture insert (3 µm, 12 mm, PITP01250, Merck). Next 1 mL of a MES/histidine puffer was carefully pipetted into the tube using a syringe and 10 µL bromphenobuffer was pipetted to follow up the elution. These tubes were placed into the agarose gel chamber and proteins eluted for 20-60 min to the cathode. After the run, the buffer with the eluted proteins was collected and analyzed by lumipulse assay or mass spectometry. Total tau levels were measured using automated lumipulse technology (Fujirebio G600II); see https://www.fujirebio.com/en/productssolutions/lumipulse-g600ii.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!