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135 protocols using l alanine

1

Inducing Muscle Cell Wasting via Growth Factor and Nutrient Deprivation

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To induce wasting via growth factor deprivation, cells were washed once in serum free DMEM (Life Technologies, Australia) and then incubated in DMEM (i.e., standard amino acid composition) containing 1% L-glutamine and 1% antibiotic solution (Life Technologies) but lacking 2% horse serum for 48 h (SF) (9 (link)). SF was supplemented with an additional 2.5 mM glycine (Sigma-Aldrich, Castle Hill, NSW, Australia) or L-alanine (Sigma-Aldrich). To induce wasting via nutrient starvation, cells were washed once in HEPES buffered saline (HBS; 20 mM HEPES/Na pH 7.4, 140 mM NaCl, 2.5 mM MgSO4, 5 mM KCl, and 1 mM CaCl2, no amino acids present), then incubated in HBS (9 (link), 10 (link)) with glycine or equimolar concentrations of L-alanine for up to 5 h. L-alanine serves as an isonitrogenous control as it does not modulate cell size and protein turnover in cell and animal models (4 (link)–6 (link), 9 (link), 10 (link)).
Rapamycin (100 nM, Sigma-Aldrich) was used to inhibit mTORC1 activation (10 (link)). We have previously reported that these atrophy models are not associated with altered myotube viability as assessed by Trypan Blue staining (9 (link)).
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2

Enantioselective Analysis of Propranolol in Plasma

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Reagents and instrumentsRacemic propranolol, S-(-)-propranolol and R-(+)-propranolol were purchased from Sigma-Aldrich (USA). L-alanine, Cu (CH3COO) 2.H2O, Cu (NO3)2.3H2O, Cu (SO4)2.5H2O, Cu (Cl) 2.2H2O and metanol were obtained from Merck (Germany). Chromatographic separations were carried out using a Cecil 1100 HPLC instrument, equipped with columns (125 mm Length× 4.0 mm I.D., particle size 5 μm, HiCHROM) packed with LiChrosorb RP8 and LiChrosorb RP18. Detection of eluted species was carried out by a UV detector (Cecil 1100, λ=275 nm). The mobile phase used was a mixture of methanol/water containing Cu (II) salts and L-alanine (pH=5.0). Injection volume of 15 μL was utilized in the chromatographic experiments.
Analysis of propranolol enantiomers in human blood serum In order to analyze propranolol enantiomers in plasma sample, µL amount of chiral propranolol standard solutions was injected in 5 mL plasma sample in order to adjust the propranolol concentrations in the desired levels. Then, the described plasma samples were mixed with 0.5mL of 30% ammonium hydroxide and 3 mL of 10% chloroform in n-heptane, shaken for 6 min, and centrifuged; the upper phase was evaporated to dryness under a stream of nitrogen. The residues were dissolved in 50 μL of methanol and injected to HPLC system for the analysis.
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3

GC-MS Analysis of Metabolite Standards

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A pure standard solution of n‐alkanes (from n‐C7 to n‐C30) for linear retention indices (IT) calibration and system quality control was from Merck (Milan, Italy) and prepared in toluene at the concentration of 100 mg L−1.
The internal standard (IS) 1,4-dibromobenzene (from Merck, Milan, Italy) solution was prepared in toluene at a concentration of 10 g L−1.
Pure reference standards used for identity confirmation of pyruvic acid, lactic acid, malonic acid, succinic acid, malic acid, 2-ketoglutaric acid, 3-hydroxybutyric acid, fumaric acid, 2-keto-3-metilvaleric acid, aspartic acid, hippuric acid, citric acid, uric acid, l-alanine, l-valine, l-leucine, l-proline, glycine, l-threonine, l-tyrosine, l-phenylalanine, l-isoleucine, l-methionine, l-cysteine, l-ornithine, l-tryptophan, xylitol, ribitol, fructose, galactose, glucose, mannitol, myo-inositol, glycerol, palmitic acid, stearic acid, and creatinine were from Merck (Milan, Italy).
Derivatizing agents O-methyl hydroxylamine hydrochloride (MOX), N,O-bis(trimethylsilyl)trifluoroacetamide (BSTFA), and LC-grade pyridine, n-hexane, dichloromethane, and toluene used as solvents were all from Merck (Milan, Italy).
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4

Gene Cloning Reagents and Procedures

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All reagents (vanillin, VA, vanillyl alcohol, vanillic acid, ferulic acid and l‐alanine) were of analytical grade and were purchased from Merck KGaA (Darmstadt, Germany). The antibiotics ampicillin and streptomycin and isopropyl‐β‐D‐thiogalactoside (IPTG) were purchased from Sigma‐Aldrich (St. Louis, MO, USA). Restriction enzymes, T4 DNA ligase and Phusion High‐Fidelity DNA Polymerase utilized for gene cloning were ordered from Thermo Fisher Scientific (Vilnius, Lithuania). All DNA oligonucleotides (primers) utilized for cloning and sequencing were synthesized by Eurofins Genomics (Ebersberg, Germany).
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5

Optimizing Recombinant Protein Expression

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pCold I and pCold TF vectors, as well as restriction endonucleases, were purchased from Takara Corporation (Dalian, China). DNA polymerase and T4 DNA ligase were obtained from Vazyme Biotechnology Corporation (Nanjing, China). The ClonFast kit was acquired from Obio Technology Corporation (Shanghai, China). 2,2′-Dipyridyl, DTT, L-cysteine, L-alanine, L-glutathione reduced (GSH), and deamino-NADH were purchased from Merck (Darmstadt, Germany). Pyridoxal-5′-phosphate was obtained from Sangon Biotechnology Corporation (Shanghai, China). All primers were synthesised by BGI (Shenzhen, China). The remaining chemicals were of analytical grade.
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6

Metabolite Profiling of Biological Samples

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The following reagents were acquired from Sigma Aldrich (St. Louis, Missouri, USA) and Merck (Darmstadt, Germany): 3-phenylbutyric acid, methoxyamine hydrochloride (MOX-HCl), anhydrous sodium sulphate (Na2SO4), urease, glucose, 4-aminobutyric acid (GABA), L-alanine, L-leucine, L-phenylalanine, L-tryptophan, L-tyrosine, ascorbic acid, citric acid, succinic acid, palmitic acid, arabinose, ribose, N,O-bis(trimethylsilyl)trifluoroacetamide (BSTFA) with 1% trimethylsilyl chloride (TMCS), and pyridine. Other chemicals used were acetonitrile, ethyl acetate, hydrogen chloride and diethyl ether from Burdick and Jackson brand (Honeywell International Inc., Muskegon, USA).
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7

Synthesis and Purification of Amino Acid Derivatives

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Starch has been purchased from Merck containing (20%-25%) amylose; for removing the moisture, it was heated up to 110°C for 10 hours, L-phenylalanine, L-leucine, L-alanine, thionyl chloride and hydrazine was purchased from Merck. Phthalic anhydride was also purchased from Merck and was recrystallized from chloroform.
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8

Amino Acid Quantification by HPLC

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Amino acid standards (L-Aspartic acid, L-Glutamic acid, L-Serine, L-Glycine, L-Histidine, L-Arginine, L-Threonine, L-Alanine, L-Proline, L-Tyrosine, L-Valine, L-Methionine, L-Cysteine L-Isoleucine, L-Leucine, L-Phenylalanine, L-Lysine) procured from Merck chemicals, Germany. HPLC grade, the two eluants A (0.05M Ammonium acetate aqueous buffer) and B (60% acetonitrile) purchased from Water Corporation, uSA.
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9

Comprehensive Amino Acid Analysis Protocol

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The HPLC-grade acetonitrile, acetic acid, l-aspartic acid, l-glutamic acid, dl-serine, l-histidine, glysine, l-threonine, l-arginine, l-alanine, l-tyrosine, l-valine, l-methionine, l-isoleucine, l-leucine, l-phenylalanine, l-ornithine monohydrochloride, l-lysine monohydrochloride, 4-aminobutyric acid (as internal standard), and DEEMM were obtained from Merck (Darmstadt, Germany). High-purity water was supplied by the PURELAB Option-Q system from Elga Veolia (High Wycombe, UK); sodium acetate was purchased from Carlo Erba Reagents (Val-de-Reuil, France); and ltryptophan was purchased from Carl Roth (Karlsruhe, Germany).
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10

Analytical Standards for Tea Bioactives

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Catechin (C, ≥98%), galloCatechin (GC, ≥98%), galloCatechin-3-gallate (GCG, ≥98%), epiCatechin (EC, ≥98%), epiCatechin-3-gallate (ECG, ≥98%), epigalloCatechin (EGC, ≥98%), epigalloCatechin-3-gallate (EGCG, ≥98%), caffeine (CAF, ≥98%), theaflavins (TF, ≥95%), theaflavins-3-gallate (TF3G, ≥98%), theaflavin-3′-gallate (TF3′G, ≥98%), theaflavine-3,3′-digallate (TFDG, ≥98%), quercetin-3-O-galactoside (≥98%), myricetin-3-O-galactoside (≥98%), kaempferol-3-O-rutinoside (≥98%), vitexin (≥98%), astragaloside (≥98%), quercetin (≥98%), and kaempferol (≥98%) were purchased from Shanghai yuanye Bio-Technology Co., Ltd. (Shanghai, China). l-alanine, l-arginine, l-aspartic acid, l-cystine, l-glutamic acid, glycine, l-histidine, l-isoleucine, l-leucine, l-lysine, l-methionine, l-phenylalanine, l-proline, l-serine, l-threonine, l-tyrosine, l-valine, l-asparagine, l-glutamine, theanine, γ-aminobutyric acid, and l-tryptophan were purchased from Sigma (Sigma-Aldrich Co., St. Louis, MO, USA). Anthrone reagent and ninhydrin/formic acid reducing agent were purchased from BeiJing DingGuochangSheng Biotech. Co., Ltd. (Bejing, China). Ethyl caprate (≥99%) was purchased from Shanghai Macklin Biochemical Technology Co., Ltd. (Shanghai, China), and n-alkane mixed standard C7-C40 was purchased from o2si (o2si smart solutions—an LGC Standards Company, Charleston, SC, USA).
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