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14 protocols using ethanol

1

Transition Metal Catalyst Synthesis

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All solvents were of analytical grade and used without further purification. [Rh(η6-C5Me5)(μ-Cl)Cl]2, [Ru(η6-p-cymene)(μ-Cl)Cl]2, 5-nitro-8-hydroxyquinoline, L-proline, aqueous formaldehyde (30% (v/v)), bpy, tetrabutylammonium nitrate (TBAN), KH-phthalate, n-octanol, D2O, doxorubicin, 2-(N-morpholino)ethanesulfonic acid (MES), human serum, Dulbecco’s Modified Eagle Medium (DMEM) and RPMI media, HSA (A8763, essentially globulin free), DG, 1-methylimidazole, 4,4-dimethyl-4-silapentane-1-sulfonic acid (DSS) were Sigma-Aldrich (Darmstadt, Germany) products and were used without further purification. Ac-Ala-His-Ala-NH2 (AHA) and Ac-Phe-His-Ala-NH2 (FHA) peptides were purchased from GenScript (Piscataway, NJ, USA). HQCl-L-Pro was prepared according to our former report [12 (link)]. NaH2PO4, Na2HPO4, KH2PO4, KCl, KNO3, NaCl, KOH, HNO3, ethanol, ethyl acetate, dichloromethane, n-hexane, diethyl-ether, and methanol were purchased from Molar Chemicals (Halásztelek, Hungary) or VWR (Budapest, Hungary).
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2

Fatty Acid Treatment Optimization

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Palmitate, elaidate, oleate and vaccenate (Sigma, Burlington, MA, USA) were diluted in ethanol (Molar Chemicals, Budapest, Hungary) to a concentration of 100 mM, conjugated with 20% FA free BSA (Sigma, Burlington, MA, USA) in a 1:4 ratio at 50 °C for 1 h. The working solution for FA treatments was always freshly prepared in FBS-free and antibiotic-free medium in a 0.2, 0.4 or 0.8 mM final concentration. The culture medium was replaced by FBS-free and antibiotic-free medium at 1 h before the cells were treated with FAs for 8–24 h at 70–80% confluence in 6-well plates (for Western blot; qPCR; electron microscopy and analysis of ceramides, DGs, TGs and fatty acid profile) or in 96-well plates (for cell viability assay and the detection of apoptosis and necrosis).
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3

Curcumin Solubilization Using Block Copolymers and Cyclodextrins

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Curcumin (Mw = 368.38 g/mol; purity ≥ 65% by HPLC), the poly(ethylene glycol)-block-poly(propylene glycol)-block-poly(ethylene glycol) block copolymers, Pluronic F108 and F127 were purchased from Sigma-Aldrich (St. Louis, Missouri, USA), P94 and P105 were a kind gift of BASF Hungary(Budapest, Hungary). Main properties of the Pluronics, structure, critical micellar concentration (cmc), hydrophilic/lipophilic balance (HLB) are summarized in Table 1. The 2-hydroxypropyl-α-cyclodextrin (HP-α-CD), 2-hydroxypropyl-β-cyclodextrin (HP-β-CD), 2-hydroxypropyl-γ-cyclodextrin (HP-γ-CD) and the soluble α/β/γ-cyclodextrin polymer crosslinked with epichlorohydrin (poly-α-CD/poly-β-CD/poly-γ-CD) were received from Cyclolab Ltd. (Budapest, Hungary), used as received. Their main properties are shown in Table 2. Methanol, ethanol, dimethyl-sulfoxide (DMSO) and acetone were of laboratory grade from Molar Chemicals Kft. (Budapest, Hungary) while sodium chloride, sodium hydroxide, potassium dihydrogen phosphate, disodium hydrogen phosphate and sodium dodecylsulfate (SDS) from Sigma-Aldrich (St. Louis, MO, USA) were of analytical (ACS) grade.
The chemical compositions of the Curcumin (Figure 1a), block-copolymers (Figure 1b) and cyclodextrin derivatives (Figure 1c–e) are shown below.
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4

Ti0.8Sn0.2O2-C Composite Electrocatalyst Synthesis

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The Ti0.8Sn0.2O2-C composite supports were prepared using Black Pearls 2000 active carbon (Cabot Corporation, Boston, MA, USA). For the composite synthesis, titanium isopropoxide (Sigma-Aldrich, St. Louis, MO, USA, 97%), tin (IV) chloride-5-hydrate (Honeywell Riedel-de Haën GmbH, Seelze, Niedersachsen Germany, 98%), nitric acid (65%, a.r., Molar Chemicals, Halásztelek, Hungary) and ultrapure water (18 MΩ cm, produced by Millipore equipment, (Burlington, MA, USA)) were used. The Pt precursor for electrocatalyst synthesis was H2PtCl6·6H2O (Sigma-Aldrich, St. Louis, MO, USA, 37.5% Pt). Further chemicals used for the Pt loading were ethanol (99.55%), ethylene glycol (99.8%), HCl (37%) and NaBH4 (99.95%) (all obtained from Molar Chemicals). The catalyst ink for the electrochemical studies was prepared using a Nafion solution (DuPont™ Nafion® PFSA Polymer Dispersions DE 520, The Chemours Company, Wilmington, DE, USA), isopropanol (Molar Chemicals) and ultrapure water (see above).
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5

Antimicrobial Activity of Mouthwashes

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To determine the antimicrobial activity of the mouthwashes, first we performed a disc diffusion assay. Adequate agar medium, such as Mueller–Hinton (Sigma-Aldrich, Munich, Germany), blood agar (Sigma-Aldrich, Munich, Germany), Sabouraud agar (Sigma-Aldrich, Munich, Germany), Rogosa agar (Sigma-Aldrich, Munich, Germany) was used with 1.8% agar concentration.
Our controls were 40 mg/mL Gentamicin (Sandoz, Basel, Switzerland), 2% chlorhexidine-digluconate (CHX, Molar Chemicals, Halásztelek, Hungary), and 10% ethanol (Molar Chemicals, Halásztelek, Hungary). Experiments were performed in five technical replicates.
10 µL of the microbial suspensions with 0.4 optical density (measured at 590 nm) were dispensed respectively on the agar surface on a 92 × 16 mm dish. Following 30 min incubation, a single sterile paper disc was placed on the agars loaded with 10 µL of the test samples. After 72 h incubation at 37 °C, the plates were scanned and digitally evaluated with a densitometry software using a Kodak Image Station 2000R (Kodak, Rochester, NY, USA). The largest diameter of inhibition zone was determined [72 (link)].
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6

Evaluating Protein and mRNA Stability

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For protein stability assay, transfection medium was replaced after overnight incubation at 37 °C with 1 mL DMEM containing the translational inhibitor cycloheximide (50 μg/mL) and the cells were incubated for 1, 2, 4, or 6 h in 12-well plates. Non-transfected samples as well as cells transfected with pcDNA3.1(–) “empty” vector were used as control in all experiments.
For mRNA stability assay, transfection medium was replaced after overnight incubation at 37 °C with 1 mL DMEM containing the mRNA synthesis inhibitor actinomycin D (5 μg/mL) and the cells were incubated for 0, 1, 2, 4, 8, or 12 h in 12-well plates.
Oleate, palmitate, palmitOleate, linOleate, and stearate (Sigma-Aldrich, St. Louis, MO, USA) were diluted in ethanol (Molar Chemicals, Halásztelek, Hungary) to a final concentration of 50 mM, conjugated with 4.16 mM FA free BSA (Sigma-Aldrich, St. Louis, MO, USA) in 1:4 ratio, at 50 °C for 1 h. The working solution for FA treatments was prepared freshly in FBS-free and antibiotic-free medium at 100 µM final concentration. The culture medium had been replaced by FBS-free and antibiotic-free medium 1 h before the cells were treated with FA. The FA-treatment was carried out for 6 h in 12-well plates.
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7

Aceclofenac Polymeric Solution Preparation

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The active pharmaceutical, aceclofenac (Figure 1a) was provided by Richter Gedeon Plc. (Budapest, Hungary). For the preparation of the viscous polymeric solutions, poly(vinyl-pyrrolidone) (PVP K90, Kollidon K90, Figure 1b) was used, which was obtained from Sigma Aldrich (Merck, Darmstadt, Germany). Triethanolamine (trolamine) and ethanol were from Molar Chemicals (Budapest, Hungary). Ultrapure, distilled water was prepared in-house by a MilliQ water purification system. Potassium dihydrogen phosphate and disodium hydrogen phosphate (Merck KGaA, Darmstadt, Germany) were employed for the preparation of the phosphate buffer solution (1 M, pH 6.8) used for the in vitro dissolution study.
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8

Lipid Extraction and Characterization Protocol

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LOM (≥98%), PG (≥98%), and phosphatidylcholine (PCL, ≥99%) from soybean were purchased from Sigma-Aldrich Co. Ltd. (Budapest, Hungary). Cholesterol (CHL, ≥99%), ethanol (96% v/v), and sodium chloride physiological solution (0.9% w/w) were obtained from Molar Chemicals Ltd., (Budapest, Hungary). All cell lines were purchased from the European Collection of Cell Cultures (Salisbury, UK). All reagents for cell line studies were purchased from Sigma–Aldrich Co. Ltd. (Budapest, Hungary) if not indicated otherwise.
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9

Antimicrobial Activity Evaluation Protocol

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Ethanol and mEthanol were purchased from Molar Chemicals Ltd., Hungary. Folin-Ciocâlteu phenol reagent (2N), sodium carbonate, 2,2-diphenyl-1-picrylhydrazyl, 2,4,6-tri(2pyridyl)-1,3,5-triazine, ascorbic acid, gallic acid, ferric chloride, acetic acid, hydrochloric acid and sodium acetate were obtained from Sigma-Aldrich, Hungary. 2,2′-azino-bis (3-ethylbenzothiazoline-6-sulfonic acid), potassium persulfate, trolox (6-hydroxy-2,5,7,8-tetramethylchromane-2-carboxylic acid) and LC/MS grade acetonitrile were procured from Merck, Germany. Dimethyl sulfoxide (DMSO) of 99.90% purity was obtained from Sigma-Aldrich, Germany; while Amoxicillin and Penicillin were purchased from Thermo Fisher Scientific, USA. All the chemicals were of analytical grade unless otherwise stated, and used without further purification. Deionized water was used for preparing the reagents and solutions, carrying out extractions and chromatographic analyses.
Standard strains of Staphylococcus aureus (CCM 4223) and Escherichia coli (CCM 3954) were obtained from the Czech collection of microorganisms (Brno, Czech Republic). The strains were cultivated over night at 37 °C on 5% Columbia blood agar (Sigma-Aldrich, Germany).
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10

Fatty acid treatment protocol for luciferase assay

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Oleate, palmitate, stearate, linoleate, elaidate, and vaccenate were diluted in ethanol (Molar Chemicals, Halásztelek, Hungary) to a final concentration of 50 mM and conjugated with 20% FA-free BSA in 1:4 ratio at 50 °C for 1 h. The working solution for FA treatments was prepared freshly in FBS-free and antibiotic-free medium at 100 µM final concentration. The FA treatment was carried out for 24 h in 12-well plates. For luciferase assay, the culture medium was replaced 5 h after transfection and the cells were incubated for a further 24 h.
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