The largest database of trusted experimental protocols

15 protocols using alexa 594

1

Monitoring Axonal Regeneration in Tibial Nerve

Check if the same lab product or an alternative is used in the 5 most similar protocols
At 16 weeks after surgery, the tibial nerve was harvested after carbon dioxide euthanasia. The nerve was treated with 4% paraformaldehyde for a duration of 24 h, followed by slicing the nerve into transverse sections of 12 μm thickness using a frozen slicer. Immunofluorescence staining was conducted using an established protocol with NF200 (MilliporeSigma, Burlington, MA, USA) staining targeted toward monitoring axonal regeneration and S100 (MilliporeSigma, Burlington, MA, USA) staining to detect Schwann cells. In short, sections of nerve tissue were incubated with primary antibodies that targeted NF200 and S100 for an overnight period at 4 °C, followed by rinsing with PBS. Afterwards, secondary antibodies conjugated with Alexa488 (Abcam, Cambridge, UK) and Alexa594 (Abcam, Cambridge, UK) were added and incubated at room temperature for 1 h. DAPI (Beyotime, Shanghai, China) was applied to the nucleus and incubated for 5 min. The tissue sections were observed via a 3D fluorescence imaging system (HOOKE INSTRUMENTS, Changchun, China).
+ Open protocol
+ Expand
2

Perfusion and Histological Analysis of Rat Brains

Check if the same lab product or an alternative is used in the 5 most similar protocols
Following behavioural testing, animals were killed by pentobarbital overdose (Euthasol, 0.8 mL, 390 mg/mL pentobarbital, 50 mg/mL phenytoin; Virbic, Fort Worth, TX, USA) and transcardial perfusion (Hart & Izquierdo, 2017 (link)). Brains were post-fixed in 10% buffered formalin acetate for 24 h followed by 30% sucrose for 5 days. 50μm sections were stained for NeuN, visualized using a BZ-X710 microscope (Keyence, Itasca, IL, USA) and analysed with BZ-X Viewer software. Lesions were determined by comparison with a standard rat brain atlas (Paxinos & Watson 1997 ). NeuN staining was performed by incubation for 24 h at 4 °C in a primary antibody consisting of 1 : 1000 rabbit polyclonal to NeuN (Abcam, Cambridge, MA, USA), 10% normal goat serum (Abcam) and 0.5% Triton X (Sigma) in PBS, followed by three 5-min washes in PBS. Secondary antibody incubations were performed for 2 h at 20 °C in the same solution with 1 : 500 goat anti-rabbit Alexa 594 (Abcam) replaced for the primary antibody, followed by three 5-min washes in PBS. Slides were subsequently mounted and cover-slipped with DAPI mounting medium (Abcam). Reconstructions of lesions are shown in Fig. 4.
+ Open protocol
+ Expand
3

Immunofluorescence Analysis of NLRP3 and IL-1β in Diabetic Retinopathy

Check if the same lab product or an alternative is used in the 5 most similar protocols
Samples from patients with PDR or donor eyecups were fixed with freshly prepared paraformaldehyde (4%) for 2 h at 4 °C, dehydrated using 30% sucrose solutions for 30 min and sent immediately to OCT compound (Sakura, PA, USA) for frozen sections. Frozen sections were cut at 10 μm thickness at −20 °C and stored at −80 °C until staining. Sections were stained by NLRP3 (1:500, Abcam, ab4207) or IL-1β (1:500, Abcam, ab2105) with CD31 (1:500, Abcam, ab24590). HRECs were fixed with freshly prepared paraformaldehyde (4%) for 30 min at 4°C. Then, cells and frozen tissue sections were washed 10 min with PBS (three times), and blocked with 1% FBS in PBS for 1 h at room temperature. After a 10-min washing with PBS three times, samples were incubated with NLRP3 or IL-1β overnight at 4 °C in a humidified chamber. After a 10-min washing with PBS three times, cells were incubated with corresponding secondary antibodies conjugated with Alexa Fluor 488 (1:500, Abcam) or Alexa 594 (1:500, Abcam) for 1 h at 37 °C in a darkened humidified chamber. Cell nuclei were stained with 4′,6-diamidino-2-phenylindole (DAPI, Sigma, St. Louis, MO, USA). Fluorescence was observed using a confocal microscope (Olympus 1X81, Olympus, Tokyo, Japan).
+ Open protocol
+ Expand
4

Multiparametric Immunofluorescence Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
Free-floating sections were blocked in 5% horse serum and incubated in 1% BSA with the following primary antibodies raised against: hα-synuclein (syn211; 1:3000), GFP (ab13970; 1:5000), choline acetyltransferase (ChAT) (AB144, Merck Millipore; 1:100), Syn-O2 (1:2000) or Syn-F1 (1:1000). The latter two antibodies, gifts from Dr. O. El-Agnaf, have been previously characterized [26 (link)]. Appropriate fluorophore-conjugated secondary antibodies (Dylight 488 and Dylight 594, from Vector Laboratories; Alexa 488 and Alexa 594 from Abcam) (1:400) were used for detection, and samples were mounted and coverslipped using Vectashield mounting medium (Vector Laboratories). Sequential scans were performed with 10x and 63x Plan-Apochromat objectives using either (i) a LSM710NLO confocal laser scanning microscope (Carl Zeiss) with tunable lasers set at 490 nm and 595 nm, or (ii) an IX2 UCB microscope (Olympus) with a DSU spinning disk unit (Olympus), a motorized stage (MBF Biosciences) and a EM-CCD camera (Hamamatsu). As negative controls, tissue sections were processed as described above with the only exception that the primary antibody (e.g., anti-ChAT) was omitted from the initial incubations (Supplementary Fig. 1).
+ Open protocol
+ Expand
5

Histological and Immunohistochemical Analysis of Liver Tissue

Check if the same lab product or an alternative is used in the 5 most similar protocols
Liver tissue were fixed in 4% neutral buffered formalin, embedded in paraffin and sectioned. Sections (5 μm) were stained with hematoxylin and eosin (H&E), Toluidine blue (TolB) or Sirius red and were evaluated microscopically. Immunohistochemical staining was performed on liver biopsies fixed in 4% paraformaldehyde and embedded in OCT. The frozen tissues were cut in 5 μm thick sections and stained using primary antibody against cytokeratin 7 (1:1500, Abcam, EPR17078), F4/80 (1:200, AbD Serotec, CI:A3-1), CD3 (1:200, Sigma C7930), Collagen I (1:200, Abcam, ab21286) CD45 (1:200, eBioscience, 30-F11), matrix metallopeptidase 9 (MMP9) (1:300, Abcam, ab38898) and anti-smooth muscle actin (ASMA) (1:100, Abcam, ab5694) and secondary anti-rabbit (1:2000, Alexa 594), anti-rat (1:2000, Alexa 647) antibodies. The nuclei were visualized with DAPI. The sections where analyzed using confocal microscopy.
+ Open protocol
+ Expand
6

Immunofluorescence Staining of Microglia

Check if the same lab product or an alternative is used in the 5 most similar protocols
Three days after the MCAO procedure, 0.9% saline and 4% paraformaldehyde were applied to perfuse the mice transcardially. Brain tissues were cut into 20-μm-thick sections following dehydration. Then, 0.1% Triton X-100 was used to permeabilize the brain sections or primary microglia for 10 minutes, and a 2% BSA blocking buffer was used to saturate the excess protein-binding sites for 90 minutes. The tissue sections and cell coverslips were incubated overnight at 4 ℃ with primary antibodies against Iba1 (1:500, Cambridge, UK). Subsequently, the brain sections and microglia were incubated with goat anti-rabbit secondary antibodies conjugated to Alexa594 (1:200; Abcam) for 2 hours at 37 ℃. The cell nuclei were stained using DAPI (4',6-diamidino-2-phenylindole, 5 g/mL) for 20 minutes. A fluorescence microscope (Olympus BX51, Japan) was used to acquire images.
+ Open protocol
+ Expand
7

Immunostaining and Fluorescence Imaging of Larval Brains

Check if the same lab product or an alternative is used in the 5 most similar protocols
For expression patterns, 3rd instar larval brains with RGs attached were dissected in ice-cold PBS and fixed in 3.7% formaldehyde at 4°C for 20mins. The samples were washed 4 times in PBS and mounted in 60% glycerol. Endogenous fluorescence was acquired on Olympus FV-3000 using a 20X, 40X or 60X objective, and processed used ImageJ. For samples requiring antibody staining brains were similarly processed and then subjected to permeabilisation (0.3% Triton X-100 + PBS; PBSTx) for 15 mins, 4 hr blocking in 5% normal goat serum in PBSTx at 4oC, followed by overnight incubation in primary antibody (1:1000 Chicken-GFP, Abcam: ab13970) and secondary with Alexa 488 or Alexa 594 (1:400; Abcam). For corazonin (1:1000; raised in Rabbit; Jan Veenstra, University of Bordeaux), all the above steps remained the step, except that dissected brains were fixed for 1hr at RT in 4% PFA and the secondary was anti-rabbit Alexa 405 (1:300, Abcam). Cell bodies were outlined manually and integrated density was used to calculate CTCF (Corrected Total Cell Fluorescence). For all samples, a similar area was measured for background fluorescence.
+ Open protocol
+ Expand
8

Multiplex Immunohistochemistry of Placental Tissue

Check if the same lab product or an alternative is used in the 5 most similar protocols
Ten micron thick placental tissue sections were washed with PBS-T, permeabilized, and incubated with Histostain Plus Broad Spectrum Blocking Solution (#859043, Novex by LifeTechnologies). Primary antibodies were diluted 1:100 in PBS-T as follows: single labeling: CD14 (mouse anti-human, 14–149–82, Invitrogen), CD56 (mouse anti-human, 14–0567–82, Invitrogen); double labeling: SARS CoV-2 spike glycoprotein (rabbit anti-human, ab272504 Abcam), CD3 (mouse anti-human, 14–0038–82, Invitrogen). Fluorescently labeled secondary antibodies were diluted 1:500 in PBS-T as follows: single labeling: Alexa 594 (anti-mouse, ab150108 Abcam); double labeling: AlexaFluor 594 (anti-mouse, ab150108 Abcam), AlexaFluor 647 (anti-rabbit, A21244, LifeTechnologies). Control slides were incubated with secondary antibodies alone. Washed slides were cover slipped with Prolong Gold with DAPI (ThermoFisher). All cohort slides were stained in bulk and imaged within 24–48 h of staining.
+ Open protocol
+ Expand
9

Immunofluorescent Localization of ZO-1

Check if the same lab product or an alternative is used in the 5 most similar protocols
Frozen sections were incubated with rabbit monoclonal anti-ZO-1 (ABCAM), followed by incubation with anti-rabbit IgG conjugated to Alexa 594 (1:400), Alexa 488, and Alexa 647 (1:400) (Abcam, Cambridge, MA, USA). The sections were stained with 4′,6-diamidino-2-phenylindole (DAPI) (Life Technologies, Molecular Probes, Carlsbad, CA, USA). Fluorescent images were collected using confocal Leica SP5 microscopy.
+ Open protocol
+ Expand
10

Immunofluorescent Characterization of Cilia

Check if the same lab product or an alternative is used in the 5 most similar protocols
ROBs were grown on coverslips and were fixed in 4% paraformaldehyde and then permeabilized with 0.2% Triton X‐100 (PBST) for 10 min. After a brief wash, they were incubated for 1 h in 1% bovine serum albumin in PBS. Immunofluorescent staining was carried out overnight at 4°C with primary antibodies against acetylated α‐tubulin, γ‐tubulin, BMP‐2, BMP receptors (BMPRII, BMPRIA and BMPRIB), Smad1/5/8 or phosphorylated (p)‐Smad1/5/8 (1:500, all from Abcam). After washes, the cells were probed with secondary antibodies conjugated with Alexa 594 or Alexa 488 (1:1000; Abcam) for 1 h at 37°C. Cellular nuclear DNA was stained with 4′‐6‐diamidino‐2‐phenylindole (DAPI) (1:800; Solarbio). The cells were imaged under Delta Vision Imaging System (Delta Vision Ultra; Cytiva). The lengths of primary cilia were measured with Image‐Pro Plus 6.0 software (Media Cybernetics). The average length of each group was calculated from at least 40 primary cilia (n = 40). The percentage of ciliated cells was obtained by counting the number of ciliated cells and the total number of cells in 10 different fields of view.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!