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10 protocols using β tubulin sc 9104

1

Probing Signaling Pathway Activation

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The following primary antibodies were purchased from Santa Cruz Biotechnology (California, USA): FRK (N19, sc-916), SLUG (sc-166476), Fibronectin (sc-8422) anti-GFP (sc-8334), β-actin (sc-130300), pTyr 20 (sc-508), pSTAT3- S7272 (sc-8001), JNK 1/2 (sc-137020), pJNK (sc-81502), p38 (sc-535), p-p38-Thr180/Tyr182 (sc-17852) and β-tubulin (sc-9104). STAT3, pSTAT3 705 (9145S), AKT (9272S), pAKT-S473 (4058S), MEK1/2 (9126) and pMEK1/2-S217/21 (9154S), were purchased from Cell Signaling (Massachusetts, USA). JNK activation was inhibited with 50ηg/mL anisomycin (Sigma-Aldrich, # A9789) for the indicated time-periods.
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2

Western Blotting of Cell Cycle Regulators

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Western blotting was done in whole-cell extracts prepared by lysing cells in lysis buffer as previously described.21 (link) The antibodies recognizing FOXK2 (A301-729A) and total FOXO3a (07-702) were purchased from Bethyl Labs (Cambridge Bioscience Ltd, Cambridge, UK) and Millipore (Hertfordshire, UK), respectively. Cyclin B1 (sc-752), PLK1 (sc-17783), Lamin B (sc-6217) and β-tubulin (sc-9104) antibodies were obtained from Santa Cruz Biotechnology (Santa Cruz; Insight Biotechnology, Middlesex, UK). Primary antibodies were detected using horseradish peroxidase-linked anti-mouse, anti-rabbit or anti-goat conjugates (Dako, Glostrup, Denmark) and visualized using the ECL detection system (PerkinElmer, Coventry, UK).
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3

Western Blot Analysis of Cellular Proteins

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Whole-cell extracts were made as previously described (Engedal et al, 2002 (link)), resolved by SDS–PAGE and transferred to a PVDF membrane (Bio-Rad). The blotted membrane was blocked in 5% nonfat dry milk in Tris-buffered saline (TBS) containing 0.1% Tween (TBS–Tween) for 1 h followed by incubation with primary antibody in TBS–Tween containing 5% bovine serum albumin (BSA) for 14–16 h at 4°C. Antibodies used were against IRE1α (3294S), phospho-PERK (3179S), PERK (3192S) phospho-eIF2α (9721L), eIF2α (9722S), phospho-JNK (9251L), JNK (9252), ATF4 (11815S), cleaved caspase-3 (9661L), PCNA (13110S) (Cell Signaling), XBP-1 (sc-7160), CHOP (sc-7351), PSA (sc-7638), β-actin (sc-58670), GAPDH (sc-47724), β-tubulin (sc-9104) (Santa Cruz), α-tubulin (Sigma-Aldrich), AR (06-680) (Upstate), and phospho-IRE1α (PA1-16927) (Thermo Scientific). The membranes were then incubated with horseradish peroxidase-conjugated anti-rabbit IgG or anti-mouse IgG (Sigma-Aldrich) secondary antibodies in 5% nonfat dry milk dissolved in TBS–Tween for 1 h at room temperature. ECL Western blotting analysis system was utilized for detection of the immunoreactive bands according to the manufacturer's instructions (Amersham Pharmacia Biotech).
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4

Melanogenesis Regulation Pathway Assay

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Plumbagin, α-MSH (M4135), arbutin (A4256), kojic acid (K3125), l-DOPA (333786), and tyrosinase (T3824) purified from mushrooms were purchased from Sigma-Aldrich (St. Louis, MO, USA). Antibodies against MITF (#12590), p-AKTS473 (#4060), p-AKTT308 (#13038), p-CREB (#9198), p-ERK1/2 (#4370), ERK1/2 (#9102), γH2AX (#9718), PARP (#5625), and caspase-3 (#9665) were purchased from Cell Signaling Technology (Danvers, MA, USA). Tyrosinase (sc-7833), and β-tubulin (sc-9104) was purchased from Santa Cruz Biotechnology (Dallas, TX, USA).
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5

Antibodies for HTLV-1 Tax Proteins

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The anti-Tax1 antibodies Lt-4 and Taxy-7 and the anti-Tax2 (GP3738) antibody have been previously described [40 (link)–42 (link)]. Anti-RelA (sc-372), anti-p52 (sc-3786), anti-p38α (sc-535), anti-JNK (sc-571), anti-nucleolin (sc-13057) and β-tubulin (sc-9104) antibodies were obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Anti-phospho-p38 (#9211), anti-phospho-SAPK/JNK (#9251), anti-phospho-Erk1/2 (#9106) and anti-Erk1/2 (#9102) antibodies were purchased from Cell Signaling (Danvers, MA, USA).
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6

Melanogenesis Regulation: Inhibition Assay

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Antibodies against MITF (#12590), p-AKTS473 (#4060), p-CREB (#9398), p-ERK1/2 (#4370), ERK1/2 (#9102), p-MEK (#9154), MEK (#9122), and ERK1/2 inhibitor U0126 were purchased from Cell Signaling Technology (Danvers, MA, USA). Anti-Tyrosinase (sc-7833) and β-tubulin (sc-9104) were obtained from Santa Cruz Biotechnology (Dallas, TX, USA). Anti-TYRP2 (DCT, ab74073) was purchased from Abcam (Cambridge, UK). Zerumbone (Z3902), arbutin (A4256), kojic acid (K3125), α-MSH (M4135), and L-DOPA (333786) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Stock solution of α-Melanocyte-stimulating hormone was prepared in phosphate buffered saline (PBS) prior to treatment. Recombinant human SCF was obtained from R&D systems (Minneapolis, MN, USA) and its stock solution (10 μM) was prepared in PBS. Stock solutions of zerumbone (20 mM), arbutin (1 M), and kojic acid (0.2 M) were prepared in dimethyl sulfoxide (DMSO). Lyophilized Zingiber officinale extract (035-061), isolated by 99% methanol, was obtained from Korea Plant Extract Bank (KPEB) (Daejeon, Korea) and Korea Research Institute of Bioscience and Biotechnology (KRIBB) (Daejeon, Korea). Stock solution of Zingiber officinale extract was prepared in DMSO prior to treatment.
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7

Protein Expression Analysis in MCF-7 Cells

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Protein lysate harvested from MCF-7 cells was quantitated with the BCA protein determination kit (Pierce Thermo Scientific, USA). An equal amount (20-30 μg) of protein lysate was subjected to gel electrophoresis on 10% SDS page gels, transferred to nitrocellulose membrane and probed with antibodies to PARP-1 (C2- 10, Trevigen, diluted 1:1000), Pro-Caspase-7 (PRS3467, Sigma, diluted 1:1000), Pro-Caspase-9 (MA1-12562, Thermo Scientific, diluted 1:1000), pH2AX (ADI-KAM- CC255, Enzo Life Sciences, diluted 1:4000), and CETP (PA1-050, ABR, diluted 1:500). β-Tubulin (sc-9104, Santa Cruz Biotechnology, diluted 1:1000) was used as a loading control. Fold change in expression of the serum protein was determined using densitometry analysis of Western blots using ImageJ.
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8

Comprehensive Immune Cell Characterization

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Antibodies for bone marrow lineage depletion and flow cytometry were purchased from BD Pharmingen, Southern Biotech and eBiosciences. In some cases, hybridoma supernatant containing antibodies against Mac-1,Gr-1, TER119, c-Kit and CD3ε were used. Antibodies and the specific clones used were: CD3 (17A2), CD8α (53-6.7), TCRβ (H57−597), Mac-1 (M1/70), DX5, Gr-1 (RB6-8C5), Ter119 and IgM (R6.60-2 or 11/41), FcγRII/III (2.4G2), CD19 (1D3), c-Kit (ACK2 or 2B8) BP1 (FG35.4), CD43 (S7), CD2 (RM2-5), Ig kappa (187.D), Integrin α5 (HMa5-1), Integrin α6-PE (GoH3) and Integrin β1 (9EG7). For immunoblotting and immunofluorescence, antibodies from Cell signaling technologies raised against the phosphorylated and total protein for Akt (4060/4685), Erk (4377/4695), p38(4511/8690), Stat5 (9351), Lyn (2731/2796), Syk (12358), FAK (3283/8556/3285), Foxo1 (2880/9454), Fyn (4023), Blnk (12168), Btk (8547), and Cyclin D2 (3741) were utilized. Antibodies against total Stat5 (sc-835X), β-tubulin (sc-9104) and Blk (K-23) were purchased from Santa Cruz Biotechnology.
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9

Comprehensive Immune Cell Characterization

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Antibodies for bone marrow lineage depletion and flow cytometry were purchased from BD Pharmingen, Southern Biotech and eBiosciences. In some cases, hybridoma supernatant containing antibodies against Mac-1,Gr-1, TER119, c-Kit and CD3ε were used. Antibodies and the specific clones used were: CD3 (17A2), CD8α (53-6.7), TCRβ (H57−597), Mac-1 (M1/70), DX5, Gr-1 (RB6-8C5), Ter119 and IgM (R6.60-2 or 11/41), FcγRII/III (2.4G2), CD19 (1D3), c-Kit (ACK2 or 2B8) BP1 (FG35.4), CD43 (S7), CD2 (RM2-5), Ig kappa (187.D), Integrin α5 (HMa5-1), Integrin α6-PE (GoH3) and Integrin β1 (9EG7). For immunoblotting and immunofluorescence, antibodies from Cell signaling technologies raised against the phosphorylated and total protein for Akt (4060/4685), Erk (4377/4695), p38(4511/8690), Stat5 (9351), Lyn (2731/2796), Syk (12358), FAK (3283/8556/3285), Foxo1 (2880/9454), Fyn (4023), Blnk (12168), Btk (8547), and Cyclin D2 (3741) were utilized. Antibodies against total Stat5 (sc-835X), β-tubulin (sc-9104) and Blk (K-23) were purchased from Santa Cruz Biotechnology.
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10

Antibody Sourcing for EMT Research

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Recombinant TGFβ1 protein (240-B) was purchased from R&D system (Minneapolis, MN, USA). Anti-Flag (F3165) mouse monoclonal antibody and V5-affinity agarose bead (A7345) were purchased from Sigma Aldrich (St. Louis, MO, USA). Anti-ID1 (sc-133104), β-actin (sc-47778) and β-tubulin (sc-9104) mouse monoclonal antibodies were purchased from Santa Cruz Biotechnology (Dallas, TX, USA). Anti-E-cadherin (610181) and N-cadherin (610921) mouse monoclonal antibodies were obtained from BD Biosciences. Anti-vimentin (CST-5741) rabbit monoclonal antibody was purchased from Cell Signaling Technology (Danvers, MA, USA). Anti-PGC1α (ST1202) and TCF4 (H00006925-M04) mouse monoclonal antibody was purchased from Merck Millipore (Billerica, MA, USA) and Abnova (Taipei, Taiwan). Anti-TWIST1 (ab50887) mouse monoclonal and anti-FOXA1 (ab170933) rabbit monoclonal antibodies were purchased from Abcam (Cambridge, MA, USA). 2′,7′-dichlorofuorescin diacetate (DCF-DA, D68883) was purchased from Sigma Aldrich (St. Louis, MO, USA).
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