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15 protocols using sodium azide

1

Lipid-based Nanoparticle Formulation Development

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The triglyceride trimyristin (Dynasan® 114) was donated by IOI Oleo, Witten, Germany and the surfactant poloxamer 407 (Kolliphor® P127) by BASF AG, Ludwigshafen, Germany. Sodium alginate (Manugel® GMB) was a kind gift from FMC International, Wallingstown, Ireland. As estimated by the supplier, the molecular weight was ~124 kDa, the content of guluronic acid (G) was 60–70% and that of mannuronic acid (M) was 30–40%. Tetrahydrofuran (HPLC grade), acetonitrile (HPLC grade), and the drugs fenofibrate and retinyl acetate were obtained from Sigma-Aldrich, Steinheim, Germany. Cannabidiol was purchased from TCH-Pharma, Frankfurt, Germany. Lumefantrine was purchased from Acros Organics, Geel, Belgium. Orlistat was donated by Formosa Laboratories Inc., Taoyuan, Taiwan. Refined rapeseed oil, sodium hydroxide, sodium azide, anhydrous glycerol, calcium chloride, acetonitrile (LC-MS grade), and tetrahydrofuran (Ultra LC-MS grade) were obtained from Carl Roth, Karlsruhe, Germany. All materials were used as received. Purified water was prepared by deionization and filtration (EASYpureTM LF, Barnstead, Dubuque, IA, USA) or was of bidistilled quality.
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2

Synthesis and Characterization of Acetylated Chitosan

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All chemicals were purchased from Sigma-Aldrich, Taufkirchen, Germany, unless otherwise stated. Human recombinant TGF-β3, derived from E. coli, was obtained from PeproTech, Hamburg, Germany. CS, with a degree of acetylation (DA) of 42%, was provided by the Institute for Technical Chemistry, Technische Universität Braunschweig, Braunschweig, Germany, and was produced by acetylation [28 (link),29 (link)] of CS (Mn 190,000–310,000 g/mol) with a DA of 15-25%, purchased from Sigma-Aldrich. Sodium azide was purchased from Carl Roth, Darmstadt, Germany.
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3

Imaging and Quantification of TIR-1::GFP in AWC Neurons

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For fluorescent and DIC images the M165 FC stereomicroscope with a DFC 340 FX camera (Leica Camera) or the Axio Zoom V16 microscope with an Axiocam 506 mono camera (Carl Zeiss Microscopy GmbH) was used and images were processed with the Zen 2.3 pro software (Carl Zeiss Microscopy GmbH). For close-up images of the C. elegans head region, the Confocal Laser Scanning Microscope Zeiss Meta 710 (Carl Zeiss Microscopy GmbH) was used. To paralyze worms for imaging, animals were treated with 0.1 µg/ml levamisole (Sigma Aldrich) or 60 mM sodium azide (Carl Roth). For analyzing TIR-1::GFP levels in AWC neurons age-synchronized L4 larvae of tir-1::gfp worms, also expressing RFP under an AWC-specific promotor (Podr-1::rfp), were grown until reaching day 1 of adulthood on OP50-seeded NGM plates supplemented with 25 µM BTZ or on plates supplemented with an equal volume of DMSO as solvent control, respectively. Worms were prepared as described above for confocal microscopy and obtained images were processed using ImageJ 1.52b. GFP fluorescence intensity was analyzed with the Imaris 9.l.2 software. Therefore, the volume of AWC neurons was determined in µm3 by creating a region of interest (ROI) based on RFP fluorescence with a threshold of 0.9 for background substraction. Within this ROI the GFP intensity was calculated as fluorescence intensity/µm3.
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4

Quantitative Analysis of Pharmaceutical Compounds

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Tetrahydrofuran (HPLC grade), curcumin, cinnarizine and fenofibrate were purchased from Sigma-Aldrich (Steinheim, Germany). Betamethasone valerate was obtained from Caelo (Hilden, Germany). Sodium azide, hydrochloric acid and sodium hydroxide were ordered from Carl Roth (Karlsruhe, Germany), flufenamic acid from TCI (Zwijndrecht, Belgium) and dibucaine from Molekula (München, Germany). Phosphoric acid was from Merck (Darmstadt, Germany). Lipofundin® MCT/LCT 10% and Propofol-Lipuro® 10 mg/mL were from B.Braun (Melsungen, Germany), Disoprivan® 1% was from AstraZeneca (Wedel, Germany).
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5

Calibration and Characterization of Fluorescent Detector

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The detector was calibrated and characterized using an aqueous solution containing fluorescent beads with a nominal diameter of 200 nm (F-8809, Thermo Fisher Scientific, Waltham, MA, USA) at a concentration of 4 * 106 particles per milliliter. In addition, the solution contained Rhodamine to detect the flow direction even in case of clogging (10 µg/mL; Quality for Fluorescence, Merck, Darmstadt, Germany), sodium chloride (5.48 mg/mL, >99.8%, Carl Roth, Karlsruhe, Germany), sodium azide (20 µg/mL, >99%, Carl Roth, Karlsruhe, Germany), and sodium dodecyl sulfate (0.1 mg/mL, >99%, Merck, Darmstadt, Germany).
For the precipitation experiments, castor oil (5 mg/mL, Henry Lamotte Oils, Bremen, Germany), polysorbate 80 (2.5 mg/mL, BioXtra, Merck, Darmstadt, Germany), and Nile Red (8 µg/mL, technical grade, Merck, Darmstadt, Germany) were dissolved in ethanol and filtered through a 200 nm syringe filter (Polypropylene, VWR International, Radnor, PA, USA). The aqueous solution used consisted of deionized water filtered through a 200 nm syringe filter.
The system was purged with a 2% solution of Hellmanex (Hellmanex III, Helma Analytics, Müllheim, Germany) in deionized water, which was filtered through a 200 nm syringe filter (Polypropylene, VWR International, Radnor, PA, USA).
The gas bubble generation and pressurizing of vials was done with nitrogen.
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6

Detecting KSHV LANA by Immunofluorescence

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The KSHV latent nuclear antigen (LANA) was detected by immunfluorescence staining. SLK cells (2.5×104 cells per well) were seeded in 8-well μ-slides (Ibidi) one day prior to infection. Cells were infected with 50 μL virus stock for 6 h and washed with PBS. Infected cells were cultured until 24 h post-infection and fixed with 4% (w/v) paraformaldehyde for 15 min at RT. Fixed cells were washed with PBS, incubated in 50 mM (w/v) NH4Cl for 20 min at RT, washed again with PBS, permeabilized with PBS/2% (v/v) Triton X-100 (Roth) for 20 min at RT, and blocked in TBS with 5% (w/v) glycine (Serva), 5% (w/v) BSA (Sigma-Aldrich), 0.05% (v/v) Tween (Roth), 0.05% (w/v) sodium azide (Roth) for 30 min at RT. Cells were stained using a polyclonal rabbit anti-LANA antiserum33 for 1 h at RT, followed by three washes with PBS and incubation with a goat anti-rabbit-AlexaFluor555 (Thermo Fisher) secondary antibody and 4′,6-diamidine-2′-phenylindole dihydrochloride (DAPI, Sigma-Aldrich) for 30 min at RT. Fluorescence images were acquired by using a Nikon A1+ confocal laser scanning microscope.
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7

Lactose Solution Preparation and Whey Permeate Usage

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All feed solutions were preserved from microbiological spoilage by addition of 0.02% (w/w) sodium azide (Carl Roth, Karlsruhe, Germany) in order to avoid the formation of biofilms that could affect the results. For preliminary experiments a model solution was used that was prepared by dissolving a pharmaceutical-grade α-lactose monohydrate (Carl Roth, Karlsruhe, Germany) in deionized water in the amounts needed to reach the desired lactose concentrations of approximately 25, 50 and 75 g/L.
Fresh sweet whey permeate was taken from a feed line of an industrial filtration process of a local dairy plant where it had been separated by a 10 kDa UF membrane and was stored at 4 °C until use. The average composition of the sweet whey permeate used is shown in Table 1.
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8

Flow Cytometric Analysis of T Cell Activation

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Cells from days 4, 6, and 8 were transferred into a 96-well round-bottom plate and washed twice with FACS buffer [PBS + 0.02% sodium azide (Roth, Germany) + 2 mM EDTA (Sigma-Aldrich) + 2% h.i. FBS]. Extracellular staining was performed with CD4 APC-Cy7 (RPA-T4; BD Biosciences), CD8 BV605 (RPA-T8; BioLegend), the dead cell marker Zombie Aqua (BioLegend), CD25 PE-Cy7 (BC96; BioLegend), CD69 PE (FN50; BD Biosciences) and incubated for 20 min at 4°C. All antibodies were used at pretested optimal concentrations. Cells were washed twice with FACS buffer. Approximately 500,000 cells were acquired on the same day using an LSRFortessaTM SORP (BD Biosciences, USA) equipped with the DIVA Software (Version 6, BD Biosciences, USA). The percentage of proliferating CD4+ cells was determined by assessment of CFSE-negative cells and activation by the percentage of CD69+ or CD25+.
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9

Lipid-based Nanoparticles for Oral Drug Delivery

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The triglyceride trimyristin (Dynasan® 114) was donated by IOI Oleo, Witten, Germany, and the surfactant poloxamer 407 (Kolliphor® P127) by BASF AG, Ludwigshafen, Germany. Sodium alginate (Manugel® GMB) was a kind gift from FMC International, Wallingstown, Ireland. As estimated by the supplier, the molecular weight was ~124 kDa, the content of guluronic acid was 60–70%, and that of mannuronic acid was 30–40%. Cholesteryl nonanoate was purchased from TCI, Zwijndrecht, Belgium. tetrahydrofuran (HPLC grade), acetonitrile (HPLC grade), bovine serum albumin (BSA, heat shock fraction, pH 7, ≥98%), and the drugs fenofibrate and retinyl acetate were obtained from Sigma-Aldrich, Steinheim, Germany. Orlistat was donated by Formosa Laboratories Inc., Taoyuan, Taiwan. Sodium azide, anhydrous glycerol, calcium chloride, acetonitrile (LC MS grade), and tetrahydrofuran (ultra LC MS grade) were obtained from Carl Roth, Karlsruhe, Germany. All materials were used as received. Water was purified by deionization and filtration (EASYpureTM LF, Barnstead, Dubuque, IA, USA) or was of bidistilled quality. The logP values of the drugs were obtained from DrugBank (calculated by ALOGPS).
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10

Multicolor Flow Cytometry Panel for Macrophages and T Cells

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Cells were collected and washed once in buffer (PBS, 1% FBS (Biochrom), 0.5% Sodium azide (Carl-Roth)). The supernatant was discarded completely and 50 µL staining solution in buffer containing all labeling antibodies was added and incubated for 30 min at 4 °C. Subsequently, the suspension was washed once with buffer and suspended in buffer containing 1% Paraformaldehyde (PFA, Carl-Roth) and analyzed the next day. The following antibodies were used for macrophage staining: CD163-Fitc (1:20, BioLegend, San Diego, CA, USA), CD80-PE (1:20, BioLegend), CD16-PerCPCy5.5 (1:200, BioLegend), CD206-APC (1:100, BioLegend), CD14-APCCy7 (1:100, BD, Franklin Lakes, NJ, USA), HLA-DR-PeCy7 (1:400, BioLegend), Life/Dead-V510 (1:100, Thermo-Fisher). Following antibodies were used for T cell staining in the proliferation setup: CD8-PE (1:50, Miltenyi Biotec), CD4-APC (1:100, BioLegend), CD3-APCCy7 (1:100, BioLegend).
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