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9 protocols using em bed

1

Electron Microscopy of Adherent and Suspension CTC

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CM61 CTCs were grown in either low attachment or adherent conditions. Adherent cells were grown on cover-slips while suspension cells were pelleted and fixed. They were both fixed overnight in 2% glutaraldehyde in 0.1 M phosphate buffer, post-fixed for 1 h in 2% osmium tetroxide in 0.1 M phosphate buffer, dehydrated through a series of graded ethanols, and embedded in EM-bed (Electron Microscopy Sciences, Fort Washington, PA, USA). The glass cover-slip was dissolved in hydrofluoric acid. Then, 100 nm sections were cut on a Leica Ultracut EM UC7 ultramicrotome (Wetzlar, Germany) and stained with uranyl acetate and lead citrate. The grids were viewed at 80 kV in a JEOL JEM-1400 transmission electron microscope (Tokyo, Japan) and images were captured by an AMT BioSprint 12 digital camera (Woburn, MA, USA).
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2

Extracellular Vesicle Transmission Electron Microscopy

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EVs were resuspended in 2% paraformaldehyde and loaded on carbon Formvar-coated copper grids, which were subsequently stained with uranyl acetate. The EVs were fixed overnight in 2% glutaraldehyde in 0.1 M phosphate buffer, post-fixed for 1 h in 2% osmium tetroxide in 0.1 M phosphate buffer, dehydrated through a series of graded ethanols, and embedded in EM-bed (Electron Microscopy Sciences, Fort Washington PA). The glass coverslip was dissolved in hydrofluoric acid. 100 nm sections were cut on a Leica Ultracut EM UC7 ultramicrotome and stained with uranyl acetate and lead citrate. The grids were viewed at 80 kV in a JEOL JEM-1400 transmission electron microscope and images captured using an AMT BioSprint 12 digital camera.
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3

Ultrastructural Analysis of Mitochondria

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Cells grown on glass coverslips were fixed overnight at 4 °C in 2% glutaraldehyde in 0.1 M phosphate buffer, before being incubated for 1 h in 2% osmium tetroxide in 0.1 M phosphate buffer, dehydrated through a series of graded ethanol concentrations, and embedded in EM-bed (Electron Microscopy Sciences). The glass coverslips were removed by treatment with hydrofluoric acid. Next, 100 nm sections were cut on a Leica Ultracut EM UC7 ultramicrotome and stained with uranyl acetate and lead citrate. The grids were viewed at 80 kV in a JEOL JEM-1400 transmission electron microscope and images were captured by an AMT BioSprint digital camera. For quantitative analysis, fields were chosen at random, and acquisition and quantification were performed using FIJI (NIH) and GraphPad Prism 9.3.1 software, respectively. Morphometric analyses of the mitochondria and substructures were performed by three investigators in a randomized, double-blind manner, which included taking the images, quantifying the data, and running the statistics separately. Images were obtained at random from three independent experiments[29 (link)].
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4

Ultrastructural Imaging of CLARITY Hybrids

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250 μm coronal sections of CLARITY hybrids were fixed overnight in 4% PFA with 2% Glutaraldehyde in 0.1 M sodium cacodylate Buffer (pH 7.3). Samples were treated consecutively with ferrocyanide-reduced OsO4 (1% OsO4 with 1.5% tetrapotassium ferricyanide) (1 h), freshly prepared and syringe-filtered, 1% Thiocarbohydrazied (TCH) (40 min), 2% OsO4 (1 h) and 1% Uranyl Acetate (overnight), before dehydration in a graded ethanol series (50, 70, 90, 100%, 10 min each), followed by 2 × in 100% Acetonitrile (10 min each). Repeated washing with H2O (3 × 5 min) was included between steps of staining and before dehydration. Tissue was then infiltrated with 25%, 50% and 75% EMBed (Electron Microscopy Sciences, Hatfield, PA) in Acetonitrile, followed by 100% EMBed (2 × 3 h) and finally EMBedding in pure EMBed with polymerization for 48 h at 60 oC. Serial ultrathin sections (200 nm each) were collected on conductive (carbon-coated) glass and Si wafer substrates, and visualized with a Zeiss Sigma FESEM (Zeiss Microscopy, Thornwood, NY) operated at 5–7 kV using BSE detection.
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5

Ultrastructural Analysis of Neurons

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SC-neuron cultures growing on PLL-laminin-coated glass cover slips were fixed overnight in 2% glutaraldehyde-100 mM sucrose and then rinsed in 0.15 M phosphate buffer before post-fixing for 1 h with 2% OsO4. Subsequently, cells were rinsed, dehydrated in graded ethanol solutions and Embedded in Embed (Electron Microscopy Sciences, Hatfield, PA). Thin sections obtained with a Leica Ultracut E microtome were stained with uranylacetate/lead citrate for examination in a Philips CM-10 transmission electron microscope.
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6

Ultrastructure Examination of Testis Tissue

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TEM was used to examine the ultrastructure integrity of BTB after HF-IR on right thorax. In brief, testes were cut into pieces to release the seminiferous tubules. Approximately 1 mm × 1 mm × 1 mm testis tissue was fixed by immersion into 2.5% glutaraldehyde then fixed in 1% osmium tetroxide, dehydrated in a graded series of ethanol. After dehydration, tubules were incubated in propylene oxide for 45 minutes, and infiltrated with EMbed (Electron Microscopy Sciences, Fort Washington, PA, USA). Sections were examined and photographed on a JEOL 100CXII electron microscope at 80 kV. Electron microscopy was performed at the Servicebio Bio-Imaging Resource Center (Shanghai, China).
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7

Exosome Ultrastructural Analysis

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Exosomes were resuspended in 2% paraformaldehyde and loaded on carbon formvar-coated copper grids, which were subsequently stained with uranyl acetate. The exosomes were fixed overnight in 2% glutaraldehyde in 0.1 M phosphate buffer, post-fixed for 1 hour in 2% osmium tetroxide in 0.1 M phosphate buffer, dehydrated through a series of graded ethanol, and embedded in EM-bed (Electron Microscopy Sciences, Fort Washington PA). The glass coverslip was dissolved in hydrofluoric acid. 100 nm sections were cut on a Leica Ultracut EM UC7 ultramicrotome and stained with uranyl acetate and lead citrate. The grids were viewed at 80 kV in a JEOL JEM-1400 transmission electron microscope and images were captured using an AMT BioSprint 12 digital camera.
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8

Ultrastructural Analysis of LNCAP Cells and Platelets

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Monolayer cell cultures of LNCAP cells and platelets were conducted in 8 wells Permanox Lab-Tek® Chamber Slides (NUNC) and fixed at 4 °C in 1.5% glutaraldehyde, 1% formaldehyde, 0.05 M cocodilate buffer. Fixed cells were post-fixed in 1% osmium tetroxide for 1 hour at 4 °C, washed in distilled water, and treated with 0.15% tannic acid and 2% uranyl acetate. Then, dehydration through graded alcohols and propylene oxide, and then EMbedding in EMbed (Electron Microscopy Sciences) was done. Ultrathin sections (50-70 nm) were stained with 1% uranyl acetate and lead citrate 22 (link). Samples were prepared and examined in a Transmission Electron Microscope using the Libra 120 (Zeiss) ITEM Imaging Platform Software (Olympus) at the Centre for Scientific Instrumentation (CIC) of the University of Granada.
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9

Transmission Electron Microscopy of Cells and Extracellular Vesicles

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EVs were resuspended in 2% paraformaldehyde (Electron Microscopy Sciences, Hatfield, PA, USA) and loaded on carbon Formvar-coated copper grids (Electron Microscopy Sciences, Hatfield, PA, USA), which were subsequently stained with uranyl acetate (Electron Microscopy Sciences, Hatfield, PA, USA). In the case of cells, they were fixed overnight in 2% glutaraldehyde (Electron Microscopy Sciences, Hatfield, PA, USA) in 0.1 M phosphate buffer (Electron Microscopy Sciences, Hatfield, PA, USA), post-fixed for 1 h in 2% osmium tetroxide (Electron Microscopy Sciences, Hatfield, PA, USA) in 0.1 M phosphate buffer, dehydrated through a series of graded ethanols (Pharmco-Aaper, Brookfield, CT, USA), and embedded in EM-bed (Electron Microscopy Sciences, Hatfield, PA, USA). The glass coverslip was dissolved in hydrofluoric acid (Sigma-Aldrich, St. Louis, MI, USA). Then, 100 nm sections were cut on a Leica Ultracut EM UC7 ultramicrotome (Leica Microsystems, Buffalo Grove, IL, USA) and stained with uranyl acetate and lead citrate (Electron Microscopy Sciences, Hatfield, PA, USA). The grids were viewed at 80 kV in a JEOL JEM-1400 transmission electron microscope (JEOL, Peabody, MA, USA) and images captured by an AMT BioSprint 12 (AMT Imaging Systems, Woburn, MA, USA) digital camera
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