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9 protocols using galectin 9

1

Basophil IgD and Galectin-9 Interactions

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Untouched human basophils were stripped of pre-bound endogenous IgD as described in published studies (Chen et al., 2009 (link)) and incubated in PBS with or without 50 μg/ml monoclonal IgD from human myeloma (Athens Research and Technology), 2.5 μg/ml galectin-9 (R&D Systems), or 50 μg/ml IgD premixed with 2.5 μg/ml galectin-9 on ice for 15 minutes. Following washing, basophils were sequentially stained with F(ab)2 to IgD biotin (Southern Biotech) and streptavidin (Life Technologies) along with antiFcɛRI FITC (clone: AER-37; eBioscience) and anti-CD44 PE (clone: IM7; Biolegend). Following additional washing, stained cells were fixed with 1 % paraformaldehyde, stained with 100 ng/ml DAPI (Sigma-Aldrich), and imaged. A similar strategy was used to image basophils included in splenocytes from Balb/c mice. These cells were incubated with an Fc-blocking 2.4G2 mAb (Tonbo Bioscience) and subsequently stained with anti-FcɛRI FITC (clone: MAR-1), anti-IgD PE (clone: 11–26c.2a) (BD Biosciences), anti-CD49b APC (clone: DX5) (Biolegend), and Ghost Violet 510 viability dye (Tonbo Bioscience). Following washing, stained cells were fixed with 1 % paraformaldehyde and stained with 5 μg/ml 7-AAD (Tonbo Bioscience).
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2

Dectin-1 IgG Fc Glycosylation Profiling

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Dectin-1 IgG Fc (8 μg; InvivoGen) was treated with PNGase F (20 μl, ~10,000 units; New England Biolabs) following the company’s non-denaturing protocol (37°C, 24 hr). PNGase F treated and untreated Dectin-1 IgG Fc samples (4 μg; InvivoGen) were added to protein G beads (25 μl, Dynabeads Protein G; novex) and the mixtures were incubated at room temperature for 10 min. The beads were washed 2 × with PBS-T (pH 7.4 with 0.02% tween). Recombinant mouse Galectin-9 (4 μg; R&D Systems) was resuspended in PBS-T or a solution of 100 mM lactose in PBS-T. Galectin-9 samples were then incubated with the Dynabead/Dectin-1 IgG Fc complex for 20 min at room temperature. The Dynabeads were then washed 3 × with PBS-T and transferred to a clean tube. Galectin-9 and Dectin-1 IgG Fc were eluted in SDS-PAGE buffer (PBS with 10% BME) by heating at 98°C for 10 min. The samples were then analyzed by SDS-PAGE and stained with Coomassie Blue.
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3

Plasma Galectin Levels in Cancer

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The concentration of gal-1, gal-8 and gal-9 was measured in plasma of healthy donors (n = 160) and cancer patients (n = 160) (see Supplementary Fig. 3). For ELISA testing, plasma samples were diluted 3-fold for galectin-1 (R&D Systems) and galectin-8 (Ray Biotech), and 10-fold for galectin-9 (R&D Systems). All ELISAs were performed according to the manufacturer’s recommendations.
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4

Dectin-1 IgG Fc Glycosylation Profiling

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Dectin-1 IgG Fc (8 μg; InvivoGen) was treated with PNGase F (20 μl, ~10,000 units; New England Biolabs) following the company’s non-denaturing protocol (37°C, 24 hr). PNGase F treated and untreated Dectin-1 IgG Fc samples (4 μg; InvivoGen) were added to protein G beads (25 μl, Dynabeads Protein G; novex) and the mixtures were incubated at room temperature for 10 min. The beads were washed 2 × with PBS-T (pH 7.4 with 0.02% tween). Recombinant mouse Galectin-9 (4 μg; R&D Systems) was resuspended in PBS-T or a solution of 100 mM lactose in PBS-T. Galectin-9 samples were then incubated with the Dynabead/Dectin-1 IgG Fc complex for 20 min at room temperature. The Dynabeads were then washed 3 × with PBS-T and transferred to a clean tube. Galectin-9 and Dectin-1 IgG Fc were eluted in SDS-PAGE buffer (PBS with 10% BME) by heating at 98°C for 10 min. The samples were then analyzed by SDS-PAGE and stained with Coomassie Blue.
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5

IgD Binding to Human Basophils

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Primary circulating human basophils were first stripped of pre-bound endogenous IgD as previously described (Chen et al., 2009 (link)) and then incubated for 15 min with 50 μg/ml monoclonal IgD (Athens Research and Technology) pre-mixed or not with 10 μg/ml galectin-9 (R&D Systems) for 15 min. Binding of IgD was detected by staining cells with FITC-conjugated goat 2032–02 F(ab’)2 pAb to IgD (Southern Biotech) or control FITC-conjugated goat F(ab’)2 IgG. A similar method was followed to measure binding of exogenous IgD or IgD-galectin-9 to human basophil-like KU812 cells, except that no stripping of endogenous pre-bound IgD was necessary.
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6

Galectin-9 Modulates Jurkat and KE-37 Cell Proliferation

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The influence of galectin-9 (R&D Systems, USA) on the proliferation of Jurkat and KE-37 cell lines was measured using 3-(4,5-dimethylthiazol-2-yl) -5-(3- carboxymethoxy-phenyl)-2- (4-sulfophenyl)- 2H-tetrazolium (MTS) cell viability assay (20 ). For this experiment, Jurkat (3 × 103 cells/well) and KE-37 (3 × 103 cells/well) cell lines were plated in 96-well plates and incubated with galectin-9 at 0.1-100 nM. After 48 h of growth, 20 μL of the MTS substrate (Promega, Tokyo, Japan) was added to each well and then were incubated for an additional 3 h. Then, the absorbance was read at 490 nm using a microplate reading spectrophotometer (BioTek, USA). According to the documents obtained from the MTS assay, the IC50 of galectin-9 for Jurkat and KE-37 cell lines was calculated. The IC50 values were determined for 0.1-100 nM concentration of galectin-9 using the GraphPad Prism software.
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7

Recombinant Galectin Production and Probes

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Recombinant galectin-1 and galectin-9 were in-house produced or purchased from R&D systems. For fluorescent anisotropy and apoptosis assays, the oxidation resistant mutant galectin-152 (link), i.e., galectin-1 C3S (in-house produced) was used.
The synthetic high-affinity tdga-probe (0.1 µM, 3′-[4-(fluorescein-5-amidomethyl)−1H-1,2,3-triazol-1-yl]−3′-deoxy-β-D-galactopyranosyl 3-(3,5-dimethoxybenzamido)−3-deoxy-1-thio-β-D-galactopyranoside)9 (link) as well as the low affinity probe (lacto-N-tetraose; LNT-probe)53 (link) were in-house produced.
Chemokines CXCL4 and CCL5 were either in-house produced51 (link) or purchased from R&D systems. All other chemokines and cytokines were purchased from R&D systems. The beta-sheet region, CXCL422-54, was chemically synthesized and purchased from Schafer-N. Anginex was a kind gift from Prof. K. Mayo (University of Minnesota, Minneapolis, USA). Antibodies were purchased from BD Biosciences unless indicated otherwise.
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8

TIM3/Galectin-9 Binding Inhibition Assay

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Example 4

Anti-TIM3 variants were tested for their ability to block a TIM3/Galectin9 interaction. Galectin-9 (R&D Systems) was adsorbed on Nunc 384-well white Maxisorp plates at 2 μg/mL in sodium bicarbonate buffer (pH 8.9) and incubated at 30° C. for 1 hour or overnight at 4° C. The plate was washed 3 times with PBS pH 7.4 with 0.05% Tween20 and blocked with 2% bovine serum albumin (BSA) in PBS pH 7.4+0.1% Tween20 for 1 hour at 30° C. The blocking solution was aspirated, and a dilution series of antibody was mixed with 10 nM biotinylated TIM3-Fc (R&D Systems) in 0.2% BSA in PBS pH 7.4+0.1% Tween20 (diluent buffer) and incubated at 30° C. for 1 hour. The plate was washed, and streptavidin-HRP (Pierce) in diluent buffer was added to all wells. After 1 hour incubation at 30° C., the plate was washed, followed by detection with SuperSignal Pico Chemiluminescent Substrate (Thermo Pierce). Luminescence was detected on a SpectraMax® M5 plate reader (Molecular Devices).

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9

Western Blot Analysis of Exosomal Galectins

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Isolated exosome samples (20 µl/sample; 8-10 µg exosomes, aroud 40 µg lysate and 20 pg recombinant galectins) were mixed with Laemmli sample buffer (Bio-rad) containing 50 mM dithiothreitol (DTT) and incubated at 95 °C for 5 minutes to reduce and denaturate proteins before loading into a 4-20% SDS-PAGE gel (Mini-PROTEAN® Bio-Rad, Veenendaal, The Netherlands) for separation by electrophoresis. Separated proteins were then transferred into a polyvinylidene difluoride membrane (Transblot Turbo, Bio-Rad) after which the membrane was blocked with 5% milk protein in phosphate-buffered saline containing 0.05% Tween-20. The membranes were then incubated with galectin-4 (1:4000) and galectin-9 (1:100) antibodies (both from R&D). After overnight incubation, the membranes were washed and incubated with horseradish peroxidase-conjugated secondary antibodies (1:5000, Dako, Santa Clara, CA, USA) for 2 h. After washing, ECL reagent (Cytiva, Marlborough, MA, USA) was used to visualize the proteins. Image J software (Wayne Rasband, National Institutes of Health, Bethesda, MD, USA) was used to analyze the data.
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