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13 protocols using envisiontm detection system

1

Immunohistochemical Analysis of Nrf2 in Heart

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Five-micrometer heart sections were prepared and mounted on aminopropyltriethoxysilane (APES) coated slides. After dewaxing with xylene and rehydrating with graded alcohol, slides were placed in 0.01 M citrate buffer solution (pH = 6.0) and pre-treatment procedures to unmask the antigens was performed in a water bath at 95°C for 30 min. Then, sections were treated with peroxidase block for 60 min followed by protein block for 60 min. Sections were incubated with anti-Nrf2 (rabbit polyclonal, 1:100, Abcam, United States) for 1 hour at room temperature. After conjugation with primary antibodies, sections were incubated with secondary antibody (EnVisionTM Detection System, DAKO, Agilent, United States) for 20 min at room temperature followed by addition of DAB chromogen (EnVisionTM Detection System, DAKO, Agilent, United States) and counter staining done with hematoxylin. Appropriate positive controls were used. For negative control, the primary antibody was not added to sections. Positive and negative controls were used in every batch of slides that were stained (not shown in figures) (Nemmar et al., 2022 (link)).
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2

Immunohistochemical Analysis of β-Catenin

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β-catenin expression in tissues without polyps was analyzed using IHC. A piece of tissue from the internal end of distal colon, approximately 1 cm wide, was collected from rats in groups M7 to M10. Half of each tissue sample was fixed in 4% neutral buffered formalin for 24 h, paraffin embedded and cut into 4 μm thick sections. IHC of colon tissues was performed by using an EnVisionTM Detection System (Dako, Troy, MI, USA), according to manufacturer’s instructions. Briefly, tissue sections were mounted onto silanized charged slides and allowed to dry for 1 h at room temperature, followed by 1 h in a 60 °C incubator. After deparaffinization and rehydration, slides were incubated with a proteinase K solution (20 μg/mL−1) for 5 min. After washing with distilled water, tissue sections were immersed in 3% H2O2 for 5 min to block endogenous peroxidase, followed by additional washing with buffer. Slides were incubated with a rabbit anti-β-catenin primary antibody (Abcam, Cambridge, UK) for 30 min in a humid chamber. After 2 rinses in buffer, slides were incubated with the detection system for 30 min. Staining was visualized with a 2,4-diaminobutyric Acid (DAB) substrate chromogen solution. Sections were dehydrated, mounted with cover glass, and observed using light microscopy (DFC425C, Leica, Wetzlar, Germany).
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3

Nestin Immunostaining in Paraffin Sections

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Immunostaining was applied on 5 μm thick paraffin sections. After deparaffinization and rehydration, the sections were treated by microwave for 20 min at 400 W in citrate buffer (pH 6.0). After antigen retrieval, samples were incubated for 1 hour at room temperature with primary antibody for nestin (Santa Cruz, USA, sc-23927, dilution 1:100). Sections were then treated with EnVisionTM Detection System (DAKO, Germany) using 3-amino-9-ethylcarbazole (AEC) as substrate, and counterstained with hematoxylin. Negative controls were performed by omitting the first antibody and stained by the EnVisionTM method, and for mouse monoclonal antibodies as isotype control mouse IgG1 (ab91353, Abcam, UK) antibody was also used. The slides were evaluated using a light microscope BX53 with DP12-CCD camera (Olympus, Germany).
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4

Immunohistochemical Staining of Tissue Arrays

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Immunohistochemical staining of the tissue arrays was performed according to standard protocols.[19 (link)] In brief, slides were deparaffinized and, after heat-induced antigen retrieval and blocking, incubated with the primary antibody. The primary antibodies and staining conditions were as follows: TGF-Δ1: Acris, #DM1047, dilution 1:100, pretreatment in EDTA-buffer for 36 min.; TGF-Δ2: Acris, #AP15815PU-S, 1:25, EDTA-buffer for 36 min.; Santa Cruz, #sc-90, 1:25, citrate-buffer for 30 min.; p-Smad2/3: Cell Signaling, #3101, 1:200, citrate-buffer for 20 min. Immunoreactivity was detected using 3,3′-diaminobenzidine tetrahydrochloride (DAB) as a chromogen. Stainings for p-Smad2/3 and TGF-Δ2 (for the Santa Cruz antibody) were performed manually using the EnVisionTM Detection System (Dako, # K406511-2). Stainings for TGF-Δ1 and TGF-Δ2 (Acris antibody) were performed on the Benchmark Ultra Autostainer (Ventana/Roche, Mannheim, Germany) using the reagents and detection systems supplied by the vendor. As positive controls we used human placenta tissue for both TGF-Δ2 antibodies, human tonsil tissue for TGF-Δ1 staining and cirrhotic liver tissue for p-Smad2/3 detection.
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5

Characterization of Sox4 Expression in Rheumatoid Arthritis Synovial Tissue

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Paraffin-embedded synovial tissues of RA were sectioned, deparaffinized, and antigen-retrieved with 0.01 M citric acid of pH 6.0. The clinical background of the patients is shown in Supplementary Table 3. Immunohistochemistry was performed with Sox4 antibody (HPA029901, rabbit polyclonal, Sigma Aldrich, 1:100) and detected with EnVisionTM Detection System (DAKO). ELS formation (Score E) and the presence of Sox4-positive cells within the infiltrating cell population without ELSs (Score SN) or with ELSs (Score SE) were assessed by a semi-quantitative four-point scale (none, 0; mild, 1; moderate, 2; and severe, 3). The total Sox4 expression score corresponds with the sum of the SN and SE scores. Triple immunofluorescence staining was performed with CXCL13 antibody (BCA1, rabbit polyclonal, Thermo Fisher, 1:100), Sox4 (HPA029901, rabbit polyclonal, Sigma Aldrich, 1:30), CD3 (Clone PS1, mouse monoclonal, Leica Microsystems, 1:200), CD4 (Clone 1F6, mouse monoclonal, Leica Microsystems, 1:100), CXCR5 (Clone 51505, mouse monoclonal, R&D Systems, 1:1000), and PD-1 (Clone NAT105, mouse monoclonal, Abcam, 1:50) and detected with TSA Plus Fluorescence Kit (PerkinElmer, Inc.). Fluorescence imaging analysis was performed using the FSX100 Fluorescence Microscope (Olympus).
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6

Immunohistochemical Detection of TRPM4

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Tissue sections were incubated at 60°C for 10 min to facilitate tissue adherence onto the slides before deparaffinization in two changes of xylene substitute (Sigma-Aldrich Co., St Louis, MO, USA) each for 15 min. This was followed by serial rehydration in graded ethanol (GmbH, Hamburg, Germany) from 100% ethanol followed by 70%, 50% and 30% ethanol, and finally in distilled water. Heat-mediated antigen retrieval was conducted in Tris-EDTA buffer (pH 9.0) using a microwave pressure cooker for 10 min followed by incubation with a mouse anti-TRPM4 monoclonal antibody (clone 10H5; Abcam, Cambridge, UK) at 1:500 dilution (1.536 μg/ml) for one hour at room temperature. Binding of the anti-TRPM4 antibody was detected using HRP-conjugated secondary anti-mouse/rabbit antibody from EnVisionTM detection system (DakoCytomation, Carpinteria, CA, USA) for 30 min and developed with DAB as the chromogen for 5 min. The sections were counterstained with fresh Gill No. 2 hematoxylin solution (Sigma Aldrich) for 10 sec and mounted with the VectaMountTM (Vector Labs, Burlingame, California) non-aqueous mounting medium.
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7

Immunohistochemical Analysis of TGF-β, Bax, and Bcl-2

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Immunostaining was applied on 5 μm thick paraffin sections. After deparaffinization and rehydration, the sections were treated by microwave for 20 min at 400 Win citrate buffer (pH 6.0). After antigen retrieval, samples were incubated overnight with primary antibody for TGF-β (Millipore, MAB1032, TB21; dilution 1:1000), Bax (Millipore, Billerica, MA, USA, dilution 1:250) and Bcl-2 (Millipore, Billerica, MA, USA, dilution 1:200). Sections were then treated with EnVisionTMDetection System (DAKO, GmbH, Jena, Germany) using a biotinylated secondary antibody. Sections from the testicle, serving as a positive control, were processed at the same time, and handled in the same way. Negative controls were performed by omitting the first antibody. The slides were evaluated using a light microscope (Olympus-2, Tokyo, Japan). Slides were evaluated by two of the authors, unaware of immunohistochemical or clinical data using ImageJ, a public domain, Java-based image processing program developed at the National Institute of Health, Bethesda, Maryland, USA.
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8

Immunohistochemical Analysis of Peritoneal Tumors

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Immunohistochemistry staining of paraffin slices of mice’ peritoneal tumor tissues and GC patient’s peritoneal metastatic lesions which were carried out on 4 μm-thick slices were identified to be tumor by hematoxylin and eosin (H&E) staining, and then performed using EnvisionTM Detection System (Dako, Agilent Technologies, Ca, USA) as protocols. When antigen retrieval was executed, the slices were incubated with the primary antibodies overnight at 4 °C, and then incubated with the horseradish peroxidase labeled secondary antibodies at 37 °C for 30 min and finally all slides were observed with diaminobenzidine. The intensity of positive staining was measured with integrated optical density. The antibodies were listed in Table S1.
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9

IHC Quantification of Ki67, ER, and MVD

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5 μm tissue sections from Formalin-Fixed Paraffin-Embedded (FFPE) samples were stained by immunohistochemistry (IHC) for the detection of Ki67, ER and VWF. Specific antibodies included rabbit anti-human Ki67 primary antibody (1:100, MIB-1, Dako), rabbit anti-human ERα (RTU, EP-1, Dako) and polyclonal rabbit anti-human von Willebrand Factor (VWF) primary antibody (1:200, #A0082, Dako), and EnVisionTM Detection System, rabbit/mouse (#411083, Dako). Ki67 was quantified as the percentage of DAB-stained nuclear area over total nuclear area (hematoxylin-stained nuclei regions), from 5 fields at 400× magnification, using the ImageJ software. Microvessel density (MVD) was determined using VWF IHC. A single microvessel was defined as previously described [40 (link)], and microvessels were quantified in 4 fields at 200× magnification.
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10

Immunohistochemical Analysis of Rat Brain

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Rats were anesthetized with isoflurane and perfused through the heart with saline followed by 4% PFA. Careful extraction of the brain from the skull allowed keeping most of the pia meningeal layer attached to the brain tissue. The brain was kept in 4% PFA overnight at 4 °C, washed in phosphate buffer and embedded in paraffin. Immunohistochemistry was carried out in 5 μm-thick paraffin section with the following primary antibodies: a mouse monoclonal antibody against CD163 (clone ED2, which recognizes the rat CD163 cell surface glycoprotein [7 (link)]) (# MCA342GA, 0.5 mg/mL, AbD Serotec, Bio-Rad) diluted 1:50, and rabbit polyclonal antibodies against Iba-1 (# 019–19,741, 0.5 mg/mL, Wako Chemicals USA, Inc.) diluted 1:500, and against myeloperoxidase (MPO) (# A0398, 3.3 mg/mL, Dako), diluted 1:100, using the EnVisionTM Detection System; (# K5007, Dako). Following incubation with biotinylated secondary antibodies (anti-rabbit made in goat # BA-1000; and anti-mouse made in horse # BA2001; both from VECTOR and used at 1:200 dilution), the immunoreaction was visualized with the avidin-biotin peroxidase method (ABC, Vector, Palex Medical S.A., Sant Cugat del Vallès, Spain) and diamenobenzidine. Cell counting was performed in a blinded fashion.
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