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Hoechst 33342 h3570

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Hoechst 33342 (H3570) is a cell-permeant nuclear counterstain that emits blue fluorescence when bound to dsDNA. It is a widely used reagent in flow cytometry, fluorescence microscopy, and other applications involving the detection and quantification of cells.

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47 protocols using hoechst 33342 h3570

1

Immunostaining for Neuronal and ER Markers

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For the immunostaining performed for stretching and toxicity analysis, samples were fixed in 2% PFA, permeabilized with 0.5% Triton X-100, and blocked with 5% FBS at room temperature. Primary antibody TUBB3 (#T8578, 1:500, Sigma, Darmstadt, Germany) was diluted in 3% FBS/0.2% Triton X-100 in DPBS and incubated overnight at 4 °C. Samples were then washed and incubated with secondary antibody (R6393, 1:500, Invitrogen, Carlsbad, CA, USA) and Hoechst 33342 (H3570, 1:1000, Invitrogen, Carlsbad, CA, USA). All images were acquired using a fluorescent microscope (TE2000-U, Nikon, Minato, Tokyo, Japan).
For the immunostaining performed on 2-well silicone insert, cells were fixed in 2% PFA and 7.5% sucrose, permeabilize in 0.1% Triton X-100 and blocked with 5% goat serum (GS) at room temperature. Primary antibodies TUBB3 (#T8578, 1:500, Sigma, Darmstadt, Germany) and KDEL (PA1-013, 1:200, Thermo Scientific, Waltham, MA, USA) were incubated overnight at 4 °C. Samples were then washed and incubated with secondary antibody (#A21449 and #06380, 1:500, Thermo Scientific, Waltham, MA, USA) Hoechst 33342 (H3570, 1:1000, Invitrogen, Carlsbad, CA, USA). All images were acquired using a laser scanning confocal microscope (Eclipse Ti, Nikon, Minato, Tokyo, Japan).
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2

Immunostaining of ECM Proteins

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All chemicals used were of analytical reagent grade. Milli-Q water was used for the preparation of standards and reagents. DAPI (23018) was purchased from Biotium (Fremont, CA, USA). Hoechst33342 (H3570) was purchased from Thermo Fisher Scientific (Waltham, MA, USA). Antibody to fibronectin (P1H11) was obtained from the Developmental Studies Hybridoma Bank (DSHB, Iowa City, IA, USA). Fibronectin (Ab268020) and tenascin C (ab108930) antibodies were purchased from Abcam (Cambridge, MA, USA). αSMA antibody (F3777) was purchased from Millipore-Sigma (St. Louis, MO, USA). N-cadherin antibody (14215) was purchased from Cell Signaling Technology (Danvers, MA, USA). Cadherin-11 antibody (368702) was purchased from BioLegend (San Diego, CA, USA). ZO-1 (40-2200) and GAPDH (PA1-987) antibodies were purchased from Thermo Fisher Scientific. The Cell Counting Kit-8 assay kit (HY-K0301) was purchased from MedChem Express (Monmouth Junction, NJ, USA). All other chemicals were obtained from Sigma-Aldrich and Thermo Fisher Scientific.
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3

Arsenite-Induced Cell Imaging

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Cells seeded in 12-well CytoOne tissue culture-treated plates (USA Scientific) were treated with arsenite for 8 hours (unless specified otherwise) and incubated with Hoechst 33342 (H3570, Thermo Fisher) and propidium iodide (P1304MP, Thermo Fisher) for 15 min before imaging on an EVOS FL auto imaging system (Invitrogen).
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4

High-Content Screening of Cell Cycle Markers

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PANC-1 and CAL120 cells constitutively expressing Cas9 protein were plated at a density of 4000 cells per well, infected in replicate in 96-well paltes at high MOI and analyzed at an endpoint of 48 hours post-infection. Cells were labeled with EdU and fixed with paraformaldehyde and then labeled with anti-pHH3 (S10) primary antibody (Rabbit: #9701, Cell Signaling, 1:800), anti-phospho-histone H2A.X (Ser139, Mouse: 05-636, END Millipore, 1:1250) and Hoechst 33342 (H3570, Thermo Fisher Scientific, 1ug/mL). Imaging was perfomed with the OperaPhenix imaging system on 20× magnification and data was analyzed using the PerkinElmer Harmony software (40 (link)). See supplemental methods for additional details.
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5

Imaging of Mitochondrial ATP Synthase in Cells

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After indicated treatments, cells were washed with PBS and fixed for 15 min with 4% paraformaldehyde at room temperature. No permeabilization step was performed. Unspecific bindings were then blocked with 1% bovine serum albumin (MB04603; NZYTech, Lisbon, Portugal) diluted in PBS, for 15 min two times. Then cells were rinsed twice, incubated for 30 min with Image-IT FX signal enhancer (136,933; Invitrogen, Carlsbad, CA, USA), washed again and incubated with rabbit anti-ATP5B (MA5-32589, Invitrogen, Carlsbad, CA, USA) at 1:200, 1 h at room temperature. Cells were then thoroughly rinsed and incubated for 1 h with Alexa Fluor 488 coupled donkey anti-rabbit (A21206; Invitrogen, Carlsbad, CA, USA) at 1:100, counterstained with Hoechst 33342 (H3570; Thermo Fischer Scientific, Waltham, MA, USA) at 1 µg/mL, and mounted in Prolong Gold (P36931; Invitrogen, Carlsbad, CA, USA). Five random images per sample were then acquired using a Leica TCS SP5 laser scanning confocal microscope (Leica microsystems, Wetzlar, Germany). Between 10 and 20 acquisitions per field were taken with a z-stack step size of 0.5 µm, in order to capture the whole sample volume. Maximum projections were then analysed with ImageJ (U.S. National Institute of Health, Bethesda, MD, USA).
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6

Cell Cycle Analysis of Organoids

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The cell cycle was assessed by RNA and DNA staining. Organoids were harvested at 7 days post seeding and dissociated to a single-cell suspension. Cells were fixed for least 2 h using 70% ethanol. Cells were then stained (50 μg/ml propidium iodide, P1304MP, ThermoFisher Scientific; 4 μg/ml Pyronin Y, 418630010, ThermoFisher Scientific; 2 μg/ml Hoechst 33342, H3570, ThermoFisher Scientific) and the cell cycle phase was assessed using a BD Fortessa flow cytometer and FlowJo software.
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7

Custom-Arrayed Anticancer Library Evaluation

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A custom-arrayed anticancer library was used [36 (link)]. Oxaliplatin came from Accord Healthcare (Ahmedabad, India). Sunitinib (PZ0012), crizotinib (PZ0191), 5-fluorouracil (F6627), everolimus (SML2282), rapamycin (R8781), plicamycin (M6891), staurosporine (S5921), thapsigargin (T9033) methotrexate (M7824), and DMSO were purchased from Sigma-Aldrich. The MAD2 inhibitor M2I-1 (312271-03-7) was from Cayman. Everolimus (HY-10218) and plicamycin (HY-A0122) for in vivo experimentation were purchased from MedChemExpress. Hoechst 33342 (H3570) and Lipofectamine® 2000 were purchased from Thermo Fisher Scientific. Propidium iodide (P4864), formaldehyde (F8775), and Triton X-100 (T8787) were purchased from Sigma-Aldrich (St. Louis, MO, USA).
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8

Single-Cell Isolation and Nucleic Staining

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Liquid samples were transferred into 1.5 mL Eppendorf tubes and subsequently mixed with 500 mL StemProTM AccutaseTM (A1110501, Thermo Fisher Scientific, Sweden), gently homogenized with a pipette by aspirating and dispensing liquid in 2-s cycles for 30 s, and incubated at 37 °C for 5 min. Samples were then filtered using a 70 µm cell strainer (431,751, Corning R, Netherlands) and centrifuged using a IKA™ GL Centrifuge (IKA™, Germany) at 11,000 rpm for 4 min. The supernatant was removed, and a fluorophore solution of saline water with Hoechst 33,342 (H3570, Thermo Fisher Scientific, Sweden), in a 0.05% v/v concentration, was added to each sample. Samples were then mixed with 1.5 mL of staining solution. Finally, the sample tubes were wrapped with aluminum foil for 20 min before cell counting.
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9

Cell Counting and Staining Techniques

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All culture harvesting, sample preparation, and cellular staining techniques used in this work have been described in detail in previous publications26 (link),27 . Briefly, for non-Cyt-B experiments, post-exposure cell counts to determine cytotoxicity were obtained using a TC-10 automated cell counter (Bio-Rad, Hercules, CA, USA). All samples were centrifuged and pellets were soft fixed in 75 mM KCl and 4% Formalin. Samples were then centrifuged, hard fixed in 4% Formalin and washed with wash buffer (1× PBS with 2% FBS). For microscope scoring, 5 µL from each sample was transferred to 30 µL of wash buffer and stained with Hoechst 33342 (H3570; Thermo Fisher Scientific, MA, USA). For IFC data acquisition, RNase (9001-99-4; MilliporeSigma) was added, samples were stained with Hoechst 33342 and incubated for 30 min at 37 °C. Following incubation, samples were centrifuged and the supernatant was pipetted off leaving approximately 30 μL.
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10

Live Cell Imaging of Yeast Mating

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Fluorescence microscopic images were acquired with a DeltaVision Elite microscope (Applied Precision) using a 60×/1.4 NA oil objective and a CoolSnap HQ2 camera (Photometrics). For time-lapse imaging, cells of opposite mating types were mixed on the ME agar plate to induce mating. After 6–8 h, a small aliquot of cell mixture was mounted onto a 2% agarose pad (in ME media) on a microscope slide covered with a coverslip. The agarose pad was set up in the DeltaVision Elite microscopy system, and the temperature was stably controlled at 29°C during imaging. For DNA staining, cells were fixed with 75% methanol and stained with 5 µg/ml Hoechst 33342 (H3570; Thermo Fisher Scientific). For all images, 10 or 20 Z-sections were collected, with the vertical distance between optical sections at 0.6 or 0.3 µm. Z-stacking images were deconvolved and combined into maximum intensity projections for analysis using SoftWorx (Applied Precision). Sporulated asci were photographed as brightfield or differential interference contrast images. Images were processed with Photoshop (Adobe) for publication.
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