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16 protocols using bc3710

1

Protein Extraction and Western Blot Analysis

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After the experiment, the cells were collected, digested with 0.25% trypsin, collected into EP tubes, and protease inhibitors were added. The whole protein extraction kit (BC3710, Solarbio Life Sciences, Beijing, China) obtained the cell protein solution, and the BCA method (PC0020, Solarbio Life Sciences, Beijing, China) was used to detect the protein concentration. SDS-PAGE electrophoresis was performed, the protein was transferred to PVDF membrane and it was blocked with 5% nonfat milk powder for 1 h at room temperature, GAPDH (anti-GAPDH (MA1-16757, Invitrogen) was used as the normalizing antibody, and the corresponding primary antibodies (anti-NLRP3 (MA5-23919, Invitrogen), anti-ASC (PA5-83948, Invitrogen), anti-Caspase-1 (2225S, CST), and anti-GSDMD (39754S, CST)) were added and incubated at 4°C overnight. Horseradish peroxidase-labeled secondary antibody was used, and ECL color was developed, protein ladders are used to mark target protein positions (26617, thermo scientific). The gray value of the target band was analyzed with a gel image processing system (Image J software).
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2

Western Blot Analysis of Cell Signaling Proteins

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Whole cell extracts were harvested according to the instruction (BC3710, Solarbio). Extract concentration was measured by BCA kit (SK1070, Coolaber, Beijing) on microplate reader (M5, Molecular Devices). Cell extracts were separated on 4%–20% SurePAGE Bis-Tris gels (Genscript) and then transferred to PVDF membranes (Millipore). Membranes with proteins were incubated with primary antibodies to be tested at 4°C overnight, then were incubated with fluorescence or HRP conjugated secondary antibodies for 1 h at room temperature. Odyssey SA system was used to detect His tagged MscL, and chemiluminescence was examined by ECL reagent (SL1350, Coolaber, Beijing). The densitometry was determined using Bio-Rad ChemiDoc Touch imaging system (1708371, Bio-Rad). Primary antibodies are as follows: Caspase-3 (9664T, cell signaling technology-CST), Caspase-3 (9746T, CST), Caspase-9 (9502T, CST), Ubiquitin (#58395, CST), Cytochrome-C (#11940, CST), LC3A/B (#12741, CST), TLR4 (ab13556, abcam). Secondary antibodies are as follows: anti-rabbit (8889S, CST), anti-rabbit (ab6721, abcam).
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3

Extraction and Detection of Sheep Intestinal Proteins

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According to the operation steps of the whole protein extraction kit (strong) (BC3710, Solarbio), the total protein was extracted from the normal sheep small intestine. The purified NMU recombinant protein and the extracted total protein were electrophoresed on 12% SDS-PAGE, the SDS–polyacrylamide gel was cut at the 13 kDa, and then transferred to polyvinylidene fluoride (PVDF) membrane. Then the PVDF membrane was blocked with Tween-20 (TBS-T) containing 50 g/L skimmed milk powder for 2 h at 37 ℃ and incubated with rabbit antiserum (diluted 1: 500) overnight at 4 ℃. After washing 3 times with TBS-T, the PVDF membrane was incubated with HRP-labeled goat anti-rabbit IgG (diluted 1: 8000) for 2 h at room temperature. Finally, after washing 3 times with TBS-T, ECL luminescent solution was dropwise added for color development.
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4

Protein Extraction and Western Blotting for Subcellular Analysis

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We used the same method as before to perform Western blotting.37 Before Western blotting, we used a total protein extraction kit (BC3710, Solarbio), cellular mitochondrial isolation kit (C3601, Beyotime) or tissue mitochondrial isolation kit (C3606, Beyotime), and nuclear protein extraction kit (R0050, Solarbio) to extract total protein, mitochondrial protein or de‐mitochondrial cytoplasmic protein, and nuclear protein, respectively. The primary antibodies used were anti‐PARP‐1 (1:1000, DF7198, Affinity); anti‐AIF (1:1000, BF0591, Affinity); anti‐COX IV (1:1000, AF5468, Affinity); anti‐Histone H3 (1:1000, AF0863, Affinity); anti‐β‐actin (1:10,000, 66009‐1‐Ig, Protentech); anti‐LC3BI/II (1:1000, A5402, Affinity); anti‐PINK1 (1:200, PA5‐85930, Invitrogen); anti‐Parkin (1:200, 702785, Invitrogen); anti‐SIRT3 (1:1000, Affinity, AF5135); anti‐SOD2/MnSOD (acetyl K68) (1:5000, ab137037, Abcam); and anti‐SOD2/MnSOD (1:5000, ab13533, Abcam). The second antibodies used were HRP‐conjugated AffiniPure Goat Anti‐Mouse IgG (1:10,000, Proteintech) and HRP‐conjugated AffiniPure Goat Anti‐Rabbit IgG (1:10,000, Proteintech). Finally, PVDF molds were visualized on a Tanon 2500R gel imaging system (Tanon) using a developer (Tanon), and the band intensity was quantified using ImageJ 1.39V software.
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5

Protein Extraction from Tissue Samples

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Proteins in the tissues surrounding the Mock group without implantation, PEG hydrogels, and PSer hydrogels were extracted using a full protein extraction kit (Solarbio, catalog no. BC3710) 2 weeks post-implantation. In brief, 1 mL of cold RIPA lysate (containing phosphatase inhibitor, protease inhibitor, and phenylmethylsulfonyl fluoride) was added to the shredded tissue, and the mixture was grinded at 4 °C. After the tissue lysate was centrifuged at 12,000 g for 30 min at 4 °C, the supernatant was pipetted into a new tube. The extracted protein is stored in aliquots at −80 °C, and the protein concentration is measured by the BCA kit (Beyotime, catalog no. P0012) before use.
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6

Protein Extraction and Western Blot Analysis

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Protein was extracted from the heart tissues and cells using a protein extraction kit (BC3710; Beijing Solarbio Science & Technology Co., Ltd Solarbio, Beijing, China) and protein concentration was quantified using a BCA assay (Thermo Fisher Scientific, Inc.) according to the manufacturer’s protocol. Protein (20 µg) was separated by 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred onto a nitrocellulose membrane (EMD Millipore). Following blocking with 5% nonfat milk in Tris buffered saline Tween-20, the blots were incubated with primary antibodies: Anti-NOD2 (1:500; sc-30080; Santa Cruz Biotechnology, Inc., Dallas, TX, USA), anti-collagen I (1:1,000; ab34710; Abcam, Cambridge, MA, USA), anti-collagen III (1:1,000; ab7778; Abcam), anti-TGF-β (1:1,000; ab31013; Abcam) and GAPDH (1:5,000; sc-25778; Santa Cruz Biotechnology, Inc.) overnight at 4°C. Then, the membranes were incubated with horseradish peroxidase-conjugated rabbit secondary antibodies (1:2,000; K5007; Dako, Agilent Technologies, Inc., Santa Clara, CA, USA) for 1 h at room temperature. The protein bands were visualized using the SuperSignal chemiluminescent detection module (34080; Pierce, Thermo Fisher Scientific, Inc.) and images were collected using a Tanon-5200 imaging system (Tanon Science and Technology Co., Ltd., Shanghai, China).
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7

Protein Expression Analysis in Myocardial Infarction

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The infarcted area and border zone (500 μg) were collected, and the proteins were extracted according to the instructions in the kit (BC3710, Solarbio). For further validation, the left ventricular sample levels, including IQGAP2, Pak3, Slit2, CD44, CD5, SOCS3, and P2RY1, were measured using a mouse IQGAP2 ELISA kit (ybE288Mu, Ambion, China), mouse Pak3 ELISA kit (CSB-PA017407LA01HU, CUSABIO), mouse Slit2 ELISA kit (Q9R1B9, RayBiotech), mouse CD44 ELISA kit (P15379, RayBiotech), mouse CD5 ELISA kit (Q91X69, RayBiotech), mouse SOCS3 ELISA kit (EKU07517, BIOMATIK), mouse Vav1 ELISA kit (JN-S-86921, AFZHAN), and mouse P2RY1 ELISA kit (CSB-EL017326MO, CUSABIO), respectively.
Samples from the left ventricle in the border zone and infarcted area were incubated with primary antibodies overnight at 4°C and then incubated with secondary antibodies for 1 h at room temperature. Antibodies against RASD2 (CUSABIO) and PIK3CD (CAF13567, BIOMATIK) were used.
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8

Western Blot Analysis of Cell Signaling

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Western blot
analysis was performed according to previous reports.25 (link) The samples were prepared using the protein extraction
kit (BC3710, Solarbio) and SDS-PAGE loading buffer, separated by SDS-PAGE
gel electrophoresis, and then transferred to nitrocellulose membranes,
which were blocked with 5% nonfat milk. The membranes were incubated
with respective primary antibodies [p-Erk1/2 (1:500, #4370), Erk1/2
(1:500, #4696), cleaved caspase-3 (1:500, #9664), RIPK1 (1:500, #3493),
and β-actin (1:2000, #4970)] overnight at 4 °C. After washing
three times in TBST buffer, the membranes were incubated with respective
secondary antibodies [antirabbit IgG HRP-conjugated antibody (1:3000,
#7074) and antimouse IgG HRP-conjugated antibody (1:3000, #7076),
Cell Signaling Technology] for 2 h at room temperature. After washing
three times in TBST buffer, the membranes were visualized using a
chemiluminescent substrate (32106, Thermo Scientific) under a ChemiDoc
MP Imaging System (Bio-Rad). The optical density of the protein bands
was calculated using Image J software.
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9

Protein Extraction and Western Blot Analysis

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The protein sample was collected from liver tissues using a protein extraction kit (BC3710, Solarbio, China) or a Nuclear and Cytoplasmic Extraction Reagent (78833, Thermo Fisher, USA). The protein was quantified using a BCA kit (PC0020, Solarbio, China). After separating the protein by SDS-PAGE, the protein was transferred into a polyvinylidene fluoride membrane (10600023, GE Healthcare Life, USA). The membrane was blocked by 5% BSA for 1 hour, then the membrane was reacted with primary antibodies and secondary antibodies. The relative intensity of the protein bands was quantified using ana ECL kit (36208ES60, YEASEN, China) with the iBright FL1500 Imaging System (A44115, Invitrogen, USA). The results were counted by ImageJ2x (Rawak Software, Germany). The primary antibodies and secondary antibodies were as follows: anti-p53 (AF0879, Affinity, USA), anti-β-actin (AF7018, Affinity, USA), Nrf2 (AF0639, Affinity, USA), Lamin B (DF6687, Affinity, USA), Heme oxygenase-1 (HO-1, AF5393, Affinity, USA), glyceraldehyde-3-phosphate dehydrogenase (GAPDH, AF7021, Affinity, USA), and goat anti-rabbit (S0001, Affinity, USA).
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10

Protein Expression Analysis in Atherosclerosis and Myocardial Infarction

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In the atherosclerosis mice model, the aorta root was collected from ApoE-/- mice and was control fed with high fat diet. In the MI mice model, the infarcted area and border zones were collected together in MI mice, and the same areas in SHAM mice were also collected. The proteins were extracted according to the kit instruction (BC3710, Solarbio). For further validations, the protein level of SYNJ2, NET1, FZD7, TBL1XR1, GNB2, PPP4C, EIF4EBP1, HCK, and LCP2 were explored with the 4°Cincubation overnight of mouse SYNJ2 primary antibodies (1:1,000, 13893-1-AP, Proteintech), mouse NET1 primary antibodies (1:500, 28180-1-AP, Proteintech), mouse FZD7 primary antibodies (1:500, 16974-1-AP, Proteintech), mouse TBL1XR1 primary antibodies (1:1,000, 55312-1-AP, Proteintech), mouse GNB2 primary antibodies (1:500, 16090-1-AP, Proteintech), mouse PPP4C primary antibodies (1:250, 10262-1-AP, Proteintech), mouse EIF4EBP1 primary antibodies (1:500, 60246-1-Ig, Proteintech), mouse HCK primary antibodies (1:500, 11600-1-AP, Proteintech), and mouse LCP2 primary antibodies (1:500, 12728-1-AP, Proteintech), respectively. The serum matrix (MILLIPLEX Analyst Kit, Millipore) was used as the positive control in the validation.
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