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Anti dykddddk mouse mab

Manufactured by Fujifilm
Sourced in United States

The Anti-DYKDDDDK mouse mAb is a laboratory antibody used for detecting and purifying proteins that have been engineered to contain the DYKDDDDK peptide tag. The antibody specifically binds to this tag, allowing for the identification and isolation of the tagged proteins.

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6 protocols using anti dykddddk mouse mab

1

In vitro CRBN-mediated protein degradation assay

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In vitro biochemical interaction assay was performed as described previously10 (link). 10 µL CRBN mixtures containing 0.5 µL biotinylated bls-CRBN in AlphaScreen buffer (100 mM Tris [pH 8.0], 0.01% Tween20, 100 mM NaCl, and 1 mg/mL bovine serum albumin [BSA]) were prepared. 5 µL compound mixtures containing thalidomide derivatives were prepared in AlphaScreen buffer. 5 µL substrate mixtures containing 0.8 µL FLAG-GST-SALL4, -IKZF1 or -PLZF in AlphaScreen buffer were prepared. Then, the three mixtures were dispensed and incubated at 26 °C for 1 h in a 384-well AlphaPlate (PerkinElmer). Subsequently, a 5 µL detection mixture containing 0.2 µg/mL anti-DYKDDDDK mouse mAb (#012-22384, FUJIFILM Wako Pure Chemical Corporation), 0.08 µL streptavidin-coated donor beads (#6760617, PerkinElmer, MA, USA), and 0.08 µL Protein A-coated acceptor beads (#6760617, PerkinElmer) in AlphaScreen buffer were added to each well and incubated. After incubation at 26 °C for 1 h, luminescence signals were detected using an EnVision plate reader (PerkinElmer version 1.12).
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2

Probing CRBN-Mediated Molecular Interactions

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IMiD at a final concentration of 50 µM and 0.5 µl biotinylated CRBN were mixed in 15 µl AlphaScreen buffer containing 100 mM Tris (pH 8.0), 0.01% Tween20, 100 mM NaCl, and 1 mg/ml BSA. Then, 5 µl of a mixture containing 0.8 µl FLAG-GST-Venus-m1, -m2, or -m3 in AlphaScreen buffer was added, and the reaction mixtures were incubated at 26 °C for 1 h in a 384-well AlphaPlate (PerkinElmer). Subsequently, 5 µl of a detection mixture containing 0.2 µg/ml anti-DYKDDDDK mouse mAb (Wako), 0.08 µl streptavidin-coated donor beads, and 0.08 µl Protein A-coated acceptor beads (PerkinElmer) in AlphaScreen buffer was added to each well. After incubation at 26 °C for 1 h, luminescence was read on an EnVision plate reader (PerkinElmer).
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3

Thalidomide Binding Assay Using AlphaScreen

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We added 20 µl of bait mixture, containing 50 µM thalidomide and 0.5 µl of biotinylated HsCRBN in AlphaScreen buffer, to 384‐well AlphaPlates using a FlexDrop Precision Reagent Dispenser (PerkinElmer). We next added 0.8 µl of FLAG‐GST‐transcription factor proteins to 384‐well AlphaPlates using a NanoHead (PerkinElmer) and a Janus Workstation (PerkinElmer). After the 384‐well AlphaPlates were incubated at 26°C for 1 h, 5 µl of detection mixture containing 0.2 µg/ml anti‐DYKDDDDK mouse mAb (FUJIFILM Wako Pure Chemical), 0.08 µl of streptavidin‐coated donor beads and 0.08 µl of protein A‐coated acceptor beads (PerkinElmer) in AlphaScreen buffer were added to each well using a FlexDrop Precision Reagent Dispenser. After incubation at 26°C for 1 h, luminescent signals were detected using an EnVision plate reader (PerkinElmer).
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4

AlphaScreen-based CRBN-IMiD Binding Assay

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Biotinylated bls-CRBN mixtures (0.5 µL) were prepared in 10 µL AlphaScreen buffer containing 100 mM Tris (pH 8.0), 0.01% Tween20, 100 mM NaCl, and 1 mg/mL BSA. IMiDs or PROTACs mixtures at the concentrations indicated were prepared in 5 µL AlphaScreen buffer. Substrate mixtures (5 µL) containing 0.8 µL FLAG-GST-neo-substrate in AlphaScreen buffer were prepared. Subsequently, the three mixtures were mixed and incubated at 26 °C for 1 h in a 384-well AlphaPlate (PerkinElmer). Then, 5 µL detection mixture containing 0.2 µg/mL anti-DYKDDDDK mouse mAb (Wako), 0.08 µL streptavidin-coated donor beads, and 0.08 µL Protein A-coated acceptor beads (µL) in AlphaScreen buffer were added to each well. After incubation at 26 °C for 1 h, luminescence signals were detected using an EnVision plate reader (PerkinElmer).
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5

AlphaScreen-based CRBN-Substrate Binding Assay

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IMiD at the concentrations indicated in each figure and 0.5 µl of biotinylated HsCRBN, MmCRBN or GgCRBN were mixed in a 15 µl of AlphaScreen buffer containing 100 mM Tris (pH 8.0), 0.01% Tween‐20, 100 mM NaCl and 1 mg/ml BSA. Then, 5 µl of substrate mixture containing 0.8 µl of FLAG‐GST‐substrate in AlphaScreen buffer was added, and 20 µl of the reaction mixture was incubated at 26°C for 1 h in a 384‐well AlphaPlate (PerkinElmer). Subsequently, 5 µl of detection mixture containing 0.2 µg/ml anti‐DYKDDDDK mouse mAb (Wako), 0.08 µl of streptavidin‐coated donor beads, and 0.08 µl of protein A‐coated acceptor beads (PerkinElmer) in AlphaScreen buffer were added to each well. After incubation at 26°C for 1 h, luminescent signals were detected using an EnVision plate reader (PerkinElmer).
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6

Quantitative CRBN-IMiD Binding Assay

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For this assay, we directly used translational mixtures from the wheat cell-free protein production system. Then, 0.5 µl of biotinylated CRBN and 0.8 µl of FLAG-GST-SALL4 or FLAG-GST-IKZF1 was mixed in 15 µl of AS buffer containing 100 mM Tris (pH 8.0), 0.01% Tween-20, 100 mM NaCl, and 1 mg ml−1 BSA. Then, 5 µl of a mixture containing 0.0125 µl of IMiD in AS buffer was added, and 20 µl of the mixture was incubated at 26 °C for 1 h in a 384-well AlphaPlate (PerkinElmer). Next, 5 µl of detection mixture containing 0.2 µg ml−1 anti-DYKDDDDK mouse mAb (dilution ratio of 1:2500, FUJIFILM Wako Pure Chemical Corporation), 0.08 µl of streptavidin-coated donor beads, and 0.08 µl of protein A-coated acceptor beads (PerkinElmer) in AS buffer was added to each well. After incubation at 26 °C for 1 h, luminescence signals were measured using an Envision plate reader (PerkinElmer).
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