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3 protocols using apaf 1

1

Western Blot Analysis of Protein Targets

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Cells were homogenised in lysis buffer [10-mM Tris-HCl (pH 7.4), 150-mM NaCl, 1% NP-40, 10-mM NaF, 0.2-mM Na3VO4 and protease inhibitor (Sigma–Aldrich)]. Proteins (30 μg) were fractionated on 10% SDS-PAGE, blotted onto a polyvinylidene difluoride membrane (Millipore, MA) and probed with primary antibodies, including SRF, LAMC1 (Santa Cruz, CA) and Apaf-1 (Proteintech, Wuhan). GAPDH (ZSGQ-BIO, Beijing) was used as a loading control. The secondary antibodies were HRP-conjugated anti-rabbit (NA 934V) and anti-mouse (NA 931V) antibodies (GE Healthcare Life Sciences, MA). Proteins were visualised by chemiluminescence according to the manufacturer's instructions (Thermo, PA), followed by exposure to X-ray film. The density of bands was densito-metrically quantified using ImageJ (National Institutes of Health, MD).
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2

Comprehensive Western Blot Analysis of Metabolic and Stress Signaling

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The protein extraction and western blot were performed according to the methods previously described [24 (link)]. The primary antibodies include SREBP1 (1:1000, Beyotime), ACC (1:1000, Proteintech), p-ACC (Ser79, 1:1000, Proteintech), AMPK (1:1000, Beyotime), p-AMPK (Ser172, 1:1000, CST), Protein kinase RNA-like endoplasmic reticulum kinase (PERK, 1:1000, Bioss), p-PERK (Thr980, 1:1000, Bioss), Phosphorylated eukaryotic initiation factor 2 (p-EIF2α at Ser51, 1:1000, Beyotime), IRE1 (1:1000, Proteintech), p-IRE1 (Ser724, 1:1000, Bioss), X-box binding protein 1 spliced (XBP1s, 1:1000, Beyotime), Activating transcription factor 4 (ATF4, 1:1000, Proteintech), C/EBP homologous protein (CHOP, 1:1000, Proteintech), p-CHOP (Ser30, 1:1000, Bioss), B-cell lymphoma-2 (Bcl2, 1:1000, Proteintech), Bcl2-associated X (Bax, 1:1000, Proteintech), CytC (1:1000, Proteintech), Apoptotic protease activating factor-1 (Apaf-1, 1:1000, Proteintech), caspase 9 (1:1000, Proteintech), caspase 3 (1:1000, Proteintech), DRP1 (1:1000, Beyotime), p-DRP1 (Ser616, 1:1000, SAB), MFN1 (1:1000, Proteintech), MFN2 (1:1000, Proteintech), Fission 1 (FIS1, 1:1000, Proteintech), ACTB (1:1000, Beyotime) and GAPDH (1:1000, Proteintech).
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3

Western Blot Analysis of Apoptosis Markers

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In brief, an equal amount of protein was separated with 10%–12% SDS-polyacrylamide gel electrophoresis (PAGE) and transferred to 0.22-μm polyvinylidene fluoride (PVDF) membranes (Millipore, Bedford, MA, USA). Thereafter, the membranes were blocked with 5% milk and immunoblotted with primary antibodies. The antibodies included APAF1 (1:500; Proteintech, Chicago, IL, USA), GAPDH (1:2,000; Zsbio, Beijing, China), and apoptotic-associated proteins such as pro- or cleaved-CASP9, cleaved-CASP3, Bcl2, and Bax (1:1,000; Affinity, OH, USA).
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