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7 protocols using magnafire sp 2.1b software

1

Brain Immunohistochemistry Analysis Post-ICH

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Twenty-four hours after ICH, mice were perfused under deep anesthesia with 100 ml of ice-cold PBS followed by perfusion with 30 ml formalin (10%). The brains were removed and fixed in formalin at 4 °C for a minimum of 3 days. Samples were then dehydrated with 30% sucrose in PBS and sectioned with cryostat (CM3050S; Leica Microsystems) in 10 µm coronal slices. Anti-PDGFR-β antibody (1:100, Santa Cruz), anti-PDGF-D (1:100, Santa Cruz), anti-MPO (1:100, Santa Cruz), anti-Macrophages/Monocytes (1:100, Millipore), anti-Iba1 antibody (1:100, Abcam), anti-NeuN (1:100, Abcam), anti-GFAP (1:100, Abcam) were incubated separately or double staining overnight at 4 °C. It was then incubated with the appropriate fluorescence conjugated secondary antibodies (1:200, Jackson Immunoresearch, West Grove, PA). The slices were visualized underneath a fluorescence microscope (Olympus BX51, Olympus Optical Co. Ltd., Japan), and pictures were taken with MagnaFire SP 2.1B software (Olympus, Melville, NY).
Macrophages and microglia were stained with ED1 and Iba-1 stains and these two types of cells were distinguished by their morphology as previously described (Power et al., 2003 (link)). Macrophage positive cells were quantified in the perihematoma region at 24 h using 12 fields per slide.
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2

Brain Tissue Loss Quantification

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The ipsilateral and contralateral hemispheres were separated by a midline incision, and weighed on a highly precise balance (sensitivity ± 0.001 g) respectively. As described previously, the percentage of brain weight loss = (weight of the ipsilateral hemisphere/weight of the contralateral hemisphere) × 100%21 (link). The 16 µm-thick brain sections were consecutively dehydrated in 95 and 70% ethanol for 2 min, then rinsed in distilled water for 10 s. Sections were then stained with 0.5% cresyl violet (Sigma-Aldrich) for 2 min and washed in distilled water for 10 s followed by dehydration with 100% ethanol and xylene for 2 min (two times, respectively) before DPX mounting media. The sections were imaged by microscope (Olympus-BX51) equipped with MagnaFire SP 2.1B software (Olympus). Brain tissue loss was measured with ImageJ 4.0. The percentage of brain tissue loss = [(contralateral hemisphere – ipsilateral hemisphere)/contralateral hemisphere] × 100%2 (link),21 (link),57 (link).
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3

Microglial response in intracerebral hemorrhage

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10 µm thick slices were first stained with OX-42 (1:1000, ABcam) and mannose receptor (1:1000, ABcam) overnight at 4 °C, followed by incubation with appropriate fluorescence conjugated secondary antibodies (Jackson Immunoresearch, West Grove, PA). The peri-hemorrhagic area was imaged by a Fluorescent Olympus-BX51 microscope and analyzed using MagnaFire SP 2.1B software (Olympus, Melville, NY). At least six sections per animal group over a microscopic field of 20 × (for microglia) were averaged and expressed as cells/field, as described (Wang and Dore, 2007 (link))
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4

Nissl Staining for Brain Tissue Loss

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Nissl staining was conducted according to a previous report [6 ]. Briefly, the rats were treated as described above for immunofluorescence staining. The frozen brains were cut into 20 μm-thick coronal sections at − 20 °C with a cryostat (CM3050S-3, Leica Microsystems, USA). The sections were dehydrated in 95% and 70% ethanol for 1 min each, rinsed in tap water, and then distilled water for 30 s. Next, the sections were stained with 0.5% Cresyl Violet (Sigma-Aldrich, USA) for 3 min, and then washed in distilled water for 10 s and 30 s. The sections were then dehydrated in 100% ethanol and xylene two times for 1.5 min each, and covered with DPX (Sigma-Aldrich, USA). The sections were imaged using a microscope (Olympus-BX51) equipped with MagnaFire SP 2.1B software (Olympus). Each of the three sections per brain was averaged and then measured with ImageJ. The percentage of brain tissue loss = (contralateral hemisphere − ipsilateral hemisphere)/contralateral hemisphere × 100% [46 (link)].
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5

Fluorescent Labeling of Caspase-3 and CHOP

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Double fluorescence labeling was performed as described previously [30 (link)]. Amongst the stored brains after India Ink angiography, 12 brains were randomly used from groups sham (n=3), SAH (n=3), low atorvastatin group (n=3), and high atorvastatin group (n=3), respectively. The intracranial internal carotid artery (ICA) was sectioned every 200 μm. Ten micrometers thick coronal sections were cut by a cryostat and incubated overnight at 4°C with the rabbit anti-Caspase 3 (1:50; Santa Cruz Biotechnology, Santa Cruz, CA) and rabbit anti-CHOP (1:500; Sigma-Aldrich, St. Louis, MO) antibodies, followed by incubation with appropriate fluorescence dye-conjugated secondary antibodies (Jackson ImmunoResearch, West Grove, PA). The sections were visualized with a fluorescence microscope, and pictographs were recorded and analyzed with MagnaFire SP 2.1B software (Olympus, Melville, NY).
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6

Hypoxia-Induced Brain Tissue Analysis

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After 24 h of hypoxia, brain tissue was removed, fixed in 4% formaldehyde, cryoprotected in a 30% sucrose solution, sliced into 20 μm sections using Leica Microsystems Nussloch GmbH (D-69226, Germany), and stained overnight with primary antibodies at 4 °C. Primary SFO neurons and HEK293 cells were cultured on glass coverslips. The treatments’ cells were fixed with 4% paraformaldehyde solution and permeabilized using 0.1% Triton X-100. Following blocking with 10% normal goat serum, the cells were incubated with primary antibodies: anti-TRPV4 (1:200), anti-TRPV1 (1:300), anti-MAP-2 (1:300), anti-HO-2 (1:200), and anti-F-actin (1:200) (Abcam, Cambridge, UK).The samples were washed and probed with the appropriate secondary antibodies (Jackson Immunoresearch, West Grove, PA, USA). Micrographs were randomly selected and captured under a fluorescent microscope and analyzed using MagnaFire SP 2.1B software (Olympus, Melville, NY, USA). Additionally, brain sections were also stained with hematoxylin and eosin to observe the SFO region microscopically.
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7

Quantifying Brain Tissue Loss via Nissl Staining

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Nissl staining was performed to evaluate brain tissue loss. The sections were successively dehydrated in 95% and 70% ethanol for 2 min and then stained with 0.5% cresyl violet (Sigma-Aldrich, USA) for 2 min, followed by dehydration with 100% ethanol and xylene for 2 min twice, respectively, before the sections were mounted with DPX (Sigma-Aldrich, USA). The sections were imaged using a microscope (Olympus-BX51) equipped with MagnaFire SP 2.1B software (Olympus). A total of 3 slices were used from each brain to determine the average percent of tissue loss, which was measured using Image J software (NIH, USA). The percentage of brain tissue loss was calculated using the same equation for the infarct area. Brain weight loss was calculated using the following formula: weight of contralateral hemisphere-weight of the ipsilateral hemisphere.
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