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7 protocols using gentle ag ab elution buffer

1

Affinity Purification of X. laevis TPX2 Antibody

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A rabbit polyclonal antibody against a 242 amino acid sequence in the N-terminus of X. laevis TPX2 was raised by Covance and affinity purified from total serum on a HiTrap N-hydroxysuccinimide–activated HP column (GE Healthcare) coupled with recombinant full length X. laevis TPX2. Antibodies were eluted with Gentle Ag/Ab Elution Buffer (Thermo Fisher Scientific) and dialyzed into 50 mM Hepes. The 242 amino acid sequence is highly conserved between X. laevis and X. tropicalis (87% identical) and X. laevis and H. boettgeri (86% identical), and was used at a 1:5,000 dilution for Western blot, and a 1:5,000 dilution for immunofluorescence.
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2

Immunodepletion and Reconstitution of Nap1 in Xenopus Egg Extracts

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Rabbit polyclonal antibodies against full-length Nap1 were raised by Covance and affinity purified from total serum on a HiTrap N-hydroxysuccinimide–activated HP column (GE Healthcare) coupled with recombinant Nap1. Antibodies were eluted with Gentle Ag/Ab Elution Buffer (Thermo Fisher Scientific) and dialyzed into 50 mM Hepes.
H1M was immunodepleted from egg extracts as previously described (Maresca et al., 2005 (link)). In brief, 55 µl CSF extract was subjected to two successive 45-min incubations with 40 µg anti-H1M antibody coupled to 200 µl protein A Dynabeads (Invitrogen). To deplete Nap1, 11 µg of affinity-purified Nap1 antibody coupled to 40 µl protein A Dynabeads (Invitrogen) was used to deplete 11 µl of egg extract over two rounds of 45-min incubations. For control (mock depleted) reactions, an equal amount of total rabbit IgG antibody was coupled to beads. Recombinant Nap1-L1B or mutants (Nap1N6, Nap1C9, and Nap1N6C9) were added back to depleted extracts at a final concentration of 1 µM to match endogenous Nap1 levels.
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3

Transthyretin Depletion from Human Serum

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Human sera from donors, who were informed of the purpose of the study and gave their written consent, were collected in accordance with the approved guidelines. Samples were subjected to affinity chromatography to remove TTR (hTTR), as follows: protein G sepharose beads (GE healthcare) were coupled to the polyclonal rabbit anti-human TTR (Dako) (2 mg of antibody per mL of beads) for 3 hours with shaking. After incubation, beads were washed and incubated 1 hour with fresh crosslinking solution (20 mM dimethyl pimelimidate (DMP) in 100 mM sodium borate pH 9.0) on a shaking platform. Then, beads linked to antibody were transferred to a column and further incubated with 1 mL of human serum for 2 hours at RT. After column packing, TTR depleted serum was collected followed by elution of TTR protein with a suitable Gentle Ag/Ab elution buffer (Thermo Scientific). TTR depletion from human serum was confirmed by western blot.
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4

Affinity Purification of 3xFLAG-LRRK2 from HEK293FT Cells

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HEK293FT cells were transfected with 3xFLAG-HD-LRRK2 using Lipofectamine 2000 (Life Technologies) for 48 h followed by lysis in buffer containing 20 mM Tris–HCl (pH 7.5), 150 mM NaCl, 3 mM KCl, 10% (v/v) glycerol, 1 mM EDTA, 0.3% (v/v) Triton X-100 supplemented with protease inhibitor cocktail (Roche) and HALT phosphatase inhibitor cocktail (Thermo Scientific). Lysates were spun down at 20 000 g for 10 min, and supernatants were pre-cleared with EZview Red Protein G Affinity Gel for 1 h followed by immunoprecipitation with EZview Red ANTI-FLAG M2 Affinity Gel (both Sigma) for 2 h and gentle washing (six times) with buffer containing 20 mM Tris–HCl (pH 7.5), 150 mM NaCl, 3 mM KCl, and 0.1% Triton. LRRK2 was eluted with Gentle Ag/Ab Elution Buffer (pH 6.6) (Thermo Scientific) with 0.01% (v/v) Triton and 150 μg/ml 3xFLAG® peptide for 30 min followed by desalting of the eluate with Zeba Spin Desalting Columns (Thermo Scientific) having a 7K molecular mass cutoff. Transfection with siRNA was made using the DharmaFECT1 transfection reagent (GE Healthcare) according to the manufacturer’s instructions. The amount of immunoprecipitated binding partner was normalized to that of the LRRK2 construct eluted from the beads, estimated by densitometry using Image J (https://imagej.nih.gov/ij/).
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5

Immunoprecipitation of FLAG-tagged Proteins

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Worms were chunked to 10 OP50 seeded NGM plates and allowed to grow for 3–4 days before being washed off with M9 into a 15 ml conical tube. Worms were pelleted and washed with M9 until bacteria was removed (∼5 times). Lysis was performed in a Precelly® machine with equal volumes of Pierce® IP Lysis buffer (Thermo, #8778). The resulting slurry was pelleted, and the supernatant was added to a tube containing 50 μl of Anti-FLAG® M2 Magnetic Beads (Sigma, #m8823). This mix was allowed to incubate on a rotating mixer at 4°C overnight. After overnight incubation, the beads were pelleted using a magnetic stand, and the supernatant was collected. The beads were washed five times using PBS+ ROCHE cOmplete™ Protease Inhibitor Cocktail tablet. Bound proteins were eluted with Thermo Gentle Ag/Ab elution buffer (#21027) and Thermo IgG Elution Buffer (#21004) for 5 min each.
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6

Isolation of Human Transthyretin from Plasma

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Human plasma from donors who were informed of the purpose of the study and gave their written consent were collected in accordance with the approved guidelines. Samples were subjected to affinity chromatography to isolate human TTR (hTTR); for this, we used 1 mL column of NHS-activated Sepharose coupled to rabbit anti-human TTR (Dako). The column was washed with PBS and then incubated with 500 μL of human plasma for 2 h at RT. To elute TTR from the column, 5 mL of Gentle Ag/Ab elution buffer (Thermo Scientific) were applied, and 1 mL-aliquots were collected and OD 280 nm was registered.
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7

Stable Recombinant IgG Production

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CHO-K1 cells stably expressing recombinant AER-37 hIgG1 or ligelizumab were grown in glutamine-free medium containing 25 uM msx and 5% dialyzed ultra-low IgG fetal bovine serum in roller bottles for 49 days. Cell culture medium was collected every seven days and replaced with fresh medium. Conditioned medium was concentrated and dialyzed into 50 mM Tris, 150 mM NaCl, pH 7.0. This material was adsorbed to GammaBind-Plus Sepharose (GE Life Sciences); IgG was was eluted with Gentle Ag/Ab Elution Buffer (ThermoFisher Scientific), dialyzed into 150 mM NaCl, and concentrated using an Amicon stirred cell.
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