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4 protocols using rabbit anti ha

1

Protein Interaction Assay in S2 Cells

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3.5×106 S2 cells were transfected with 250ng
Ubi-Gal4, 250ng of pAWH-Strn-Mlck (Strn-Mlck-HA under the actin5C promoter),
and 250ng of pUASt constructs or 250ng Ubi-Gal4, 250ng of Strn-Mlck-HA, and
250ng of UAS-Flag-Yki constructs using DDAB (dimethyldioctadecyl-ammonium
bromide, Sigma) (Han, 1996 (link)) at 250
μg/ml in six well plates. IPs were performed 2–3 days after
transfection. Cells were harvested and lysed in buffer containing 25 mM
Hepes, 150 mM NaCl, 1 mM EDTA, 0.5 mM EGTA, 0.9 M glycerol, 0.1%
Triton X-100, 0.05% deoxycholic acid, 0.5 mM DTT, and Complete
protease inhibitor cocktail (Roche). Flag IPs were performed using anti-Flag
M2 agarose beads (Sigma-Aldrich). IP reactions were performed at 4°C
overnight. For immunoblotting, 8% SDS-PAGE gels were used and
transferred onto nitrocellulose. Antibodies were used at the following
concentrations: mouse anti-Flag M2 at 1:50,000 (Sigma-Aldrich), rabbit
anti-HA at 1:5,000 (Rockland). Fluorescently labeled IRdye800 (Rockland) and
Alexa Fluor 680 (Invitrogen) secondary antibodies were used at a
concentration of 1:5,000. Images of the blots were obtained using Odyssey
CLx with ImageStudio software (LI-COR Biosciences).
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2

Co-Immunoprecipitation of Protein Complexes

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Cos-7 and HEK-tsa cells were maintained at 25°C and 7.5% CO2 in culture medium consisting of 10% fetal bovine serum (Omega), 1% penicillin/streptomycin (Mediatech) and 1% L-glutamine (Sigma) in low glucose DMEM with 2 mM L-Glutamine (Mediatech). Cells were grown to 50–80% confluence for transfection with X-tremegene HP reagent (Roche) at a 2:1 ratio of transfection reagent to DNA in Optimem (Life Technologies). Transfection mixture was removed 24 hours after transfection and replaced with normal growth medium. Cells were lysed 48 hours after transfection in SDS lysis/IP buffer (10 mM Tris [pH 7.5], 100 mM NaCl, 5mM EDTA, 1% Triton X-100, and 0.05% SDS) with Complete protease inhibitors (Roche). For co-immunoprecipitation assays, 500 μg of total cell lysate was incubated in a total volume of 1 ml SDS lysis/IP buffer with primary antibodies overnight at 4°C on a rotating platform. The following day, protein-G conjugated magnetic beads (NEB) were added and incubated at 4°C for 2 – 5 hours. Beads were washed 3 times in a 1 ml volume of IP wash buffer (10 mM Tris [pH 7.5], 100 mM NaCl, 5 mM EDTA, 0.5% Triton X-100, and 0.05% SDS) and resuspended in 2X LDS sample buffer (Life Technologies). Antibodies used were rabbit anti-GFP (Life Technologies) or rabbit anti-HA (Rockland).
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3

Immunostaining and Western Blot Analysis

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The following antibodies were used for immunostaining; Rabbit anti-CtIP (D76F7, #9201, cell signaling, Danvers, MA, USA), mouse anti-CtIP (D-4, 271339, Santa Cruz Biotechnology, Dallas, TX, USA), rabbit anti-TPX2 (NB500-179, NOVUS, Centennial, CO, USA), rabbit anti-γ tubulin (T3559, Sigma, St Louis, MO, USA), mouse anti-α-tubulin (#14-4502-82, Invitrogen), rabbit anti-human ANA-Centromere CREST (90C-CS1058, Fitzgerald, Wicklow, Ireland), mouse anti-BubR1 (ab4637, abcam, Cambridge, UK), rabbit anti-Mad1 (sc-67338, Santa Cruz Biotechnology), rabbit anti-Mad2 (A300-300A, Bethly, Fortis life sciences, Waltham, MA, USA), rabbit anti-phospho Aurora A T288 (3079, Cell Signaling, Danvers, MA, USA), mouse anti-RCC1 (F-2, Santa Cruz Biotechnology). The following antibodies were used for Western blot analysis; mouse anti-CtIP (D-4, 271339, Santa Cruz Biotechnology), rabbit anti-TPX2 (NB500-179, NOVUS), rabbit anti-CyclinB1 (H-433, Santa Cruz Biotechnology), rabbit anti-Histone H3 (06-755, Millipore, Burlington, MA, USA), rabbit anti-phospho-Histone H3 Ser10 (9701, Cell Signaling), mouse anti-β-actin (sc-47778, Santa Cruz Biotechnology), mouse anti-Flag (M2, Sigma) and mouse anti-HA (F-7, Santa Cruz Biotechnology). For Immunoprecipitation assay, mouse anti-Flag (M2, Sigma) and rabbit anti-HA (600-401-384, Rockland, Limerick, PA, USA) were used.
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4

Visualizing hM3Dq DREADD Expression

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HA-tagged hM3Dq DREADD expression in the hippocampus and cortex of CamKIIα-tTA::TetO-hM3Dq bigenic mice (P7) was visualized using immunofluorescent staining for the HA epitope. Pups single-positive for either CamKIIα-tTA or TetO-hM3Dq were used as the genotype-controls. Mice were sacrificed by transcardial perfusion with 4 % paraformaldehyde, and 40 µm thick serial coronal sections were obtained using a vibratome (Leica, Germany).
Following a permeabilization step at room temperature in phosphate-buffered saline with 0.4% Triton X-100 (PBSTx) for one hour, the sections were then incubated in the blocking solution [1% Bovine Serum Albumin (Roche, Cat. No. 9048-49-1), 5% Normal Goat Serum (Thermoscientific, Cat. No. PI-31873) in 0.4% PBSTx] at room temperature for one hour. The sections were incubated with primary antibody, rabbit anti HA (1:250; Rockland, Cat. No. 600-401-384, USA) for 4 days at 4°C. Following sequential washes with 0.4% PBSTx, the sections were incubated with the secondary antibody, goat anti rabbit IgG conjugated to Alexa Fluor 568 (1:500; Invitrogen, Cat. No. A-11079, USA) for two and a half hours at room temperature, followed by washes with 0.4% PBSTx. Sections were mounted on to slides using Vectashield Antifade Mounting Medium with DAPI (Vector, H-1200, USA) and images were visualized on a LSM5 exciter confocal microscope (Zeiss, Germany).
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