Ubi-Gal4, 250ng of pAWH-Strn-Mlck (Strn-Mlck-HA under the actin5C promoter),
and 250ng of pUASt constructs or 250ng Ubi-Gal4, 250ng of Strn-Mlck-HA, and
250ng of UAS-Flag-Yki constructs using DDAB (dimethyldioctadecyl-ammonium
bromide, Sigma) (Han, 1996 (link)) at 250
μg/ml in six well plates. IPs were performed 2–3 days after
transfection. Cells were harvested and lysed in buffer containing 25 mM
Hepes, 150 mM NaCl, 1 mM EDTA, 0.5 mM EGTA, 0.9 M glycerol, 0.1%
Triton X-100, 0.05% deoxycholic acid, 0.5 mM DTT, and Complete
protease inhibitor cocktail (Roche). Flag IPs were performed using anti-Flag
M2 agarose beads (Sigma-Aldrich). IP reactions were performed at 4°C
overnight. For immunoblotting, 8% SDS-PAGE gels were used and
transferred onto nitrocellulose. Antibodies were used at the following
concentrations: mouse anti-Flag M2 at 1:50,000 (Sigma-Aldrich), rabbit
anti-HA at 1:5,000 (Rockland). Fluorescently labeled IRdye800 (Rockland) and
Alexa Fluor 680 (Invitrogen) secondary antibodies were used at a
concentration of 1:5,000. Images of the blots were obtained using Odyssey
CLx with ImageStudio software (LI-COR Biosciences).