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8 protocols using sc 5538

1

Paeruptorin A Cell Signaling Analysis

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PA was purchased from ChemFaces (Wuhan, China). A stock solution of Paeruptorin A (PA) was made at a concentration of 100 mM in dimethyl sulfoxide (DMSO) and stored at −20 °C. Antibodies against cyclin D1 (sc-717), p21 (sc-397), Skp2 (sc-7164), p27 (sc-528), TIMP-1 (sc-5538), TIMP-2 (sc-5539), p-ERK1/2 (sc-16982), ERK (sc-94), p-JNK (sc-6254), JNK (sc-571), p-p38 (sc-17852-R), p38 (sc-7972) and β-actin (sc-47778) were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). MMP-2 (ab92536) and MMP-9 (ab137867), HRP-conjugated anti-mouse (sc-516102) and anti-rabbit (sc-2004) secondary antibodies were purchased from Abcam (Cambridge, UK). The MEK1/2 inhibitor PD98059 was purchased from Calbiochem (San Diego, CA, USA). MTT was purchased from Sigma (St. Louis, MO, USA). All stock solutions were wrapped in foil and stored at −20 °C until use.
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2

Quantifying Liver Fibrosis Markers

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The Western blotting procedure is similar to our previous reports [17 (link), 23 (link)]. Briefly, the liver tissue from the rat model was lysed in RIPA buffer containing a proteinase inhibitor cocktail (Biocolor BioScience & Technology, Shanghai, China). The protein concentration was determined using bicinchoninic acid (Bioss, Beijing, China). Protein was loaded at 30 μg/gel each lane, separated on 10% SDS-PAGE and transferred to nitrocellulose membranes. The blots were incubated with rabbit primary antibodies anti-MMP-1 (1:1000, sc-241561) or TIMP-1 (1:1000, sc-5538) (Santa Cruz Biotech, USA) and anti-GAPDH (rabbit monoclonal antibody, 1:1000, Ab181602, Abcam, UK) at 4 °C overnight, then washed extensively with 0.1% Tween-20 in PBS and incubated with a secondary antibody conjugated to horseradish peroxidase (1:5000; sc-2004, Santa Cruz, USA) at room temperature for 3 h. The blot was visualized using the ECL system (Amersham, UK).
The serum levels of Smad7, collagen I, collagen III, laminin and hyaluronic acid were detected using ELISA according to the manufacturer’s instruction. The ELISA kits for Smad7 (# CSB-E09225r) and hyaluronic acid (# CSB-E08120r) were purchased from CUSABIO Technology LLC (Wuhan, China), and the kits for collagenase I (# CX20064), collagenase III (# kt210320) and laminin (# KT20202) were from MSKBIO (Wuhan, China).
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3

Baicalein Modulates Tight Junction Proteins

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Dulbecco’s modified Eagle’s medium (DMEM), fetal bovine serum (FBS), and antibiotics were purchased from Welgene (Daegu, Korea). Baicalein, 3-(4,5-dimethyl-2-thiazolyl)-2,5-diphenyl-2H-tetrazolium (MTT), hematoxylin and eosin (H&E), and lipopolysaccharide (LPS) were purchased from Sigma-Aldrich Chemical Co (St. Louis, MO, USA). Antibodies against claudin-1 (519000), -2 (516100), -3 (341700), and -4 (329400) were obtained from Calbiochem (San Diego, CA, USA). Akt (sc-8312), phosphorylated (p)-Akt (sc-101629), tissue inhibitors of metalloproteinase (TIMP)-1 (sc-5538) and TIMP-2 (sc-5539), MMP-2 (sc-10736) and MMP-9 (sc-10737), and β-actin (sc-1616) antibodies were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Peroxidase-labeled donkey anti-rabbit and sheep anti-mouse immunoglobulin were purchased from Amersham Corp. (Arlington Heights, IL, USA). All other chemicals were purchased from Sigma-Aldrich Chemical Co.
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4

Histomorphological Evaluation and Protein Expression

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In addition to histomorphological evaluation, serial sections were stained for COL2A1, NF-κB p65, MMP-13 and TIMP-1. After deparaffinization and rehydration of the tissue sections, the proteins were immunostained using a two-step method following the kit manufacturer’s instructions. The sections were incubated with rabbit polyclonal anti-COL2A1 antibody (sc-28887, 1:50; Santa Cruz), mouse monoclonal anti-NF-κB p65 antibody (sc-8008, 1:50; Santa Cruz), goat polyclonal anti-MMP-13 antibody (sc-31813, 1:50; Santa Cruz), or rabbit polyclonal anti-TIMP-1 antibody (sc-5538, 1:50; Santa Cruz) overnight at 4°C. The slides were washed three times in PBS followed by a 20 min incubation at 37°C with an anti-mouse/rabbit IgG detection system (PV-9000, Zhongshan Goldenbridge Biotechnology Co., China), anti-goat IgG detection system (PV-9003, Zhongshan Goldenbridge Biotechnology Co., Beijing, China) and visualized with diaminobenzidine (DAB). Nuclei were counterstained with hematoxylin for 5 min. Negative control sections were prepared with the same protocol as above, but the primary antibody was replaced by PBS. The optical density of stained slides was measured using image analysis software (NikonH600L Microscope and image analysis system, Japan). COL2A1 was expressed by relative intensity. NF-κB (p65), MMP-13 and TIMP-1 were expressed by percentage of positive cells.
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5

Western Blot Analysis of Protein Expression

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Proteins were extracted from the left lobe using RIPA buffer containing protease inhibitor cocktail (Selleck, Houston, USA), and an equal amount of proteins (70 μg) from each sample was separated by 12% SDS-PAGE and transferred onto PVDF membranes (Millipore, Billerica, USA). The membranes were blocked with Tris-buffered saline and Tween 20 buffer containing 5% fat-free milk powder for 1 h at room temperature and then incubated overnight at 4°C with different primary antibodies, including rabbit monoclonal to alpha smooth muscle Actin (α-SMA; 1:1000; ab32575; Abcam), rabbit polyclonal to TIMP-1 (1:100; sc-5538; Santa Cruz Biotechnology) and Monoclonal Mouse Anti-glyceraldehyde-3-phosphate Dehydrogenase (GAPDH; 1:10000; KC-5G4; Aksomics, Shanghai, China). After extensive wash, membranes were incubated with fluorescein-conjugated secondary antibody for 1 h (1:10000; LI-COR Biosciences, Lincoln, USA). Protein bands of interest were analyzed using the Odyssey Infrared Imaging System (LI-COR). GAPDH was used as the loading control.
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6

Quantitative MMP-9 and TIMP-1 Protein Analysis

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Total protein was extracted from brain homogenate using RIPA lysis buffer (Sigma, St. Louis, MO, USA). Equal protein samples (30 μg) were separated on denaturing 10% polyacrylamide gels electrophoresis and transferred to a polyvinylidene difluoride membrane. MMP-9 and β-actin proteins were determined by probing the membranes with the following primary antibodies, rabbit monoclonal antibody to MMP-9 (ab76003, Abcam, UK, 1:10000), rabbit polyclonal antibody to TIMP-1 (sc-5538, Santa Cruz, USA, 1:1000), mouse monoclonal to β-actin (sc-81178, 1:1000), and secondary antibody mouse anti-rabbit IgG-HRP, goat anti-mouse IgG-horseradish peroxidase (HRP) (sc-2357 and sc-2005, 1:5000). Quantitative analysis was performed with Gel-Pro Analyzer 3.1 software.
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7

Quantitative Analysis of Metalloproteinases

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Real-time qPCR was performed in triplicate for all samples and standards with approximately 25 ng were separated on SDS-polyacrylamide gels (12%) for Western blot analysis using anti-MMP-3, -tissue inhibitor of metalloproteinase (TIMP)-1, -TIMP-2, -TIMP-3, -Wnt5a, -Wnt5b, -Lrp5, -Fzd9, -MMP-1, -MMP-2, -MMP-9, -MMP-13, and -β-tubulin polyclonal antibodies (sc-6839, sc-5538, sc-6835, sc-6836, sc-365370, sc-109464, sc-21390, sc-33509, sc-13595, sc-6840, sc-30073, and sc-9935, respectively; Santa Cruz Biotechnology Inc.), and an anti-MMP-1 antibody (ab118529; Abcam, Cambridge, UK). Visualization and quantification of blotted protein bands were performed using a Multi Gauge-Ver3.X (Fujifilm, Tokyo, Japan).
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8

Protein Expression Analysis of Poly(P) Effects

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Cells were cultured for 6 h with or without Poly(P) and then lysed using cell lysis buffer (Cell Signaling Technology Japan, K.K., Tokyo, Japan). Protein lysates were separated on SDS-polyacrylamide gels (12%) in preparation for western blot analysis using anti-ALP, -OC, -OP, -MMP-3, -DMP-1, and -β-tubulin polyclonal antibodies (sc-271431, sc-30044, sc-10593, sc-6839, sc-5538, sc-13595, sc-6840, sc-30073, and sc-9935, respectively; Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA). Visualization of blotted protein bands was performed using a Multi Gauge-Ver3.X (Fujifilm, Tokyo, Japan).
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