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4 protocols using opal 520 reagent pack

1

Multiplex Immunohistochemistry of PARP-1 and Immune Markers

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The 10 μm sections of frozen tissue were stained with rabbit anti-human PARP (clone 46D11, Cell Signaling Technology 9532, 1:1000), with secondary detection using rabbit Alexa Fluor 568 (Life Technologies, Thermo Fisher Scientific, A11036, 1:250). DAPI (Thermo Fisher Scientific 62248, 0.5 μg/mL) was a nuclear counterstain. Contiguous 10 μm sections of frozen tissue were stained using mouse anti-human CD3 (clone LN10, Leica PA0122, undiluted) and mouse anti-human multi-cytokeratin (clones AE1 and AE3, Leica NCL-L-AE1/3, 1:400). CD3 visualization was done using Opal HRP Polymer (PerkinElmer ARH1001EA) and Opal 520 Reagent Pack (PerkinElmer FP1487001KT, 1:100). Detection of cytokeratin was done by incubating with goat anti-mouse Alexa Fluor 647 (Life Technologies, Thermo Fisher Scientific, A21236, 1:250). Leica Biosystems BOND-III (Leica Microsystems) was utilized, and heat-induced epitope retrieval with BOND Epitope Retrieval Solution 2 (Leica Microsystems AR9640) was done for 20 minutes. Slides were mounted in ProLong Gold (Life Technologies, Thermo Fisher Scientific, P36961). The primary monoclonal PARP-1 antibody was validated on fixed and frozen tissue as a strong nuclear signal across a variety of normal tissues known to express PARP-1 prior to use.
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2

Immunohistochemical Analysis of Murine Macrophages

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Formalin-fixed, paraffin-embedded tissue sections (pancreatic body and tail; female and male mice combined) were dewaxed with xylene and rehydrated in an ethanol series. Antigen retrieval was performed in AR9 buffer (Akoya Biosciences, Menlo Park, CA), and sections were then immersed in blocking/diluent buffer (PerkinElmer, Richmond, CA). For immunohistochemistry, sections were incubated overnight with primary rat antimouse F4/80 antibody (#MCA497B; Bio-Rad) diluted 1:200 in blocking/diluent buffer. After washing, the Labelled Polymer-Dako REAL EnVision HRP kit (Agilent Dako, Santa Clara, CA) was then used to visualize antigen-antibody complexes.
For immunofluorescence, sections were incubated overnight with rat antimouse F4/80 (#MCA497B; Bio-Rad), rabbit antimouse pSTAT (Tyr701) (#44-376; Thermo Fisher Scientific), and rabbit antimouse Ym1 (#60130; STEMCELL Technologies, Cambridge, MA) antibodies (1:200 dilution in blocking buffer). Slides were then counterstained with multiplexing fluorescence kits from PerkinElmer: Opal 520 Reagent Pack, FITC, Opal 570 Reagent Pack, TRITC, and Opal 650 Reagent Pack, CY5, according to manufacturer’s instructions. 4′,6-diamidino-2-phenylindole was used for nuclear counterstain. Images were taken with a Nikon Eclipse 90i.
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3

Fluorescent in situ Hybridization of Ttr and Pomc

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Freely floating brain series were pretreated with 1% H2O2 in K-PBS and 0.3% glycine and 0.3% (v/v) Triton X-100 in K-PBS for 10 min. They were then mounted on Superfrost Plus Gold Slides (EMS, #71864-01). Fluorescent in situ hybridization was conducted using ACD RNAScope Fluorescent Multiplex Kit V2 following the manufacturer protocol. Ttr and Pomc were labeled with Opal 690 Reagent Pack (Perkin-Elmer) and Opal 520 Reagent Pack (Perkin-Elmer) respectively. The slides were counterstained with DAPI and mounted with Prolong Gold Mounting Media (Invitrogen), then cover slipped. Slides were scanned with a 20x objective Hamamazu camera (Axio Scan.Z1) and images were post-processed in Halo.
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4

Multiplex Immunohistochemistry Protocol

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Tissue sections were deparaffinized with xylene, rehydrated through graded alcohol and Milli-Q, before incubation in 3.5% formalin for 10 min. Sections were then placed in a cuvette filled with Milli-Q and pH 6 citrate buffer (1:10) and treated with a Decloaking Chamber™ (Biocare Medical, USA) for 10 min at 110 C. Afterward, sections were washed with Milli-Q and TBST Tris (Buffered Saline with Tween 20, Dako) and cooled. Nonspecific binding was blocked by incubation with Antibody Diluent for 10 min. These steps were followed by incubation with the primary antibody of the first marker. After incubation, sections were rinsed in TBST Tris and incubated with the secondary antibody for 20 min, before applying FITC-staining with the Opal™ 520 Reagent Pack (1:100, PerkinElmer) for 10 min. Sections were then washed with TBST Tris and placed in a cuvette filled with AR6 Buffer (PerkinElmer)
List of monoclonal antibodies used. The second marker was applied on the following day. After applying the primary and secondary antibodies of the second marker, sections were Cy5-stained with the TSA™-Plus Cyanine 5 System (1:50, PerkinElmer). Sections were then rinsed in Milli-Q and counterstained with TBST Tris diluted Spectral DAPI (1:12.5, PerkinElmer) for nuclei.
Finally, all tissue sections were mounted with VECTRASHIELD® Har-dSet™ Antifade Mounting Medium (Vector) and coverslipped.
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