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3 protocols using m5273

1

Profiling Cytokine and Cytotoxic Mediator Production in CD8+ T Cells

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To assess cytokines, perforin (PRF) and granzyme B (GZMB) production, CD8+CCR4+ T cells were sorted and left overnight in T cell medium (Roswell Park Memorial Institute-1640 medium (11875093) supplemented with 1% (v/v) glutaMAX-I (35050061), 1% (v/v) non-essential amino acids (11140068), 1 mM sodium pyruvate (11360088), 50 μM β-mercaptoethanol (31350010), penicillin (50 U/mL), streptomycin (50 µg/mL) (15070063), 1% (v/v) kanamycin (15160047) (all from Gibco, Life Technologies) and 5% (v/v) human serum (Swiss Blood Centre, Basel)). Cells were then stimulated with 50 ng/mL phorbol 12-myristate 13-acetate (P1585, Sigma-Aldrich) and 1 μg/mL ionomycin (I0634, Sigma-Adrich), resuspended in T cell medium, for 5 hours at 37°C in a 5% carbon dioxide-humidified atmosphere. After 2.5 hours, 10 μg/mL brefeldin A (B5936, Sigma-Aldrich) and 2 mM monensin (M5273, Sigma-Aldrich) were supplemented. Where indicated, directly conjugated anti-CX3CR1 antibody (online supplemental table 1) was added to the cells 30 min prior to fixation. Intracellular staining of cytokines, PRF and GZMB, was performed using fluorochrome-conjugated antibodies (online supplemental table 1) and Cytofix/Cytoperm kit (554714, BD Biosciences), according to the manufacturer’s instructions. All samples were acquired on BD LSRFortessa (BD Biosciences), and the results were analysed with FlowJo software V.10.7.1 (Tree Star).
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2

Quantifying Canonical and Non-Canonical Autophagy

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Autophagy was activated by incubating MEF cells in Hanks balanced salt solution (HBSS) (Thermo Fisher, 11550456) for 2 h at 37°C. Non‐canonical autophagy was stimulated in MEFs with monensin (Sigma‐Aldrich, M5273) or chloroquine (Sigma‐Aldrich, C6628) with a final concentration of 100 µM for 2 h. Numbers of fluorescent LC3 puncta were quantified by fluorescence microscopy using spot function software (IMARIS package [BITPLANE sScientific Software]) to locate puncta ranging from 0.5–1.0 μm diameter. LC3 vacuoles were identified by eye as rings of fluorescence ranging between 2 and 8 μm diameter. Non‐canonical autophagy/LAP was assessed in BMDMs by incubation with Zymosan A (Alexa Fluor 594‐labelled; Thermo Fisher Z23374). Phagosomes containing Zymosan were observed by eye using immunofluorescence microscopy. Line profile analysis was applied across the centre of the phagosome using ImageJ. The extent of recruitment of LC3 to the phagosome was calculated by subtracting the LC3 pixel intensity at the centre of the phagosome from intensity observed at the perimeter. Conjugation of LC3 to PE was also assessed by Western blot from the ratio of LC3II.
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3

Multiparameter Analysis of Lymphoid Cells

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Single-cell suspensions of lymph nodes, spleen, and tumors were prepared and stained as previously described (Arenas-Ramirez et al., 2016) . Fluorochrome-conjugated antibodies are listed in Table S1. Intracellular CD107a, FoxP3, and IFN-g staining was performed following the manufacturers' instructions after in vitro restimulation using PMA and ionomycin (0.1 mg/mL and 1 mg/mL, P8139 and I0634, Sigma-Aldrich) in the presence of brefeldin A and monensin (2 mg/mL, B7651 and M5273, Sigma-Aldrich). Samples were acquired with a BD LSR II flow cytometer (BD Biosciences) and analyzed using FlowJo software.
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