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7 protocols using fusion pulse 6

1

Western Blot Validation of TRPC4 Antibody

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The signal of the above-mentioned primary goat anti-human TRPC4 was confirmed via Western blot (Supplementary Figure S1). Proteins were separated using a 10% Mini-Protean® TGX precast gel (BioRad, Hercules, CA, USA). After blotting, PVDF membranes were blocked with 5% skimmed milk in TBS buffer with 0.1% Tween for 1 h at room temperature and incubated with the primary antibody overnight. Incubation with the secondary antibody was performed for 1 h at room temperature. Blots were analyzed using the chemiluminescence system Fusion Pulse 6 (Vilber Lourmat, Collégien, France). For the detection of multiple antigens, antibodies were removed by incubation with the re-blot mild stripping solution (Merck, Rahway, NJ, USA) for 15 min. Primary antibodies: goat anti-TRCP4 (Thermo Fisher Scientific, Waltham, MA, USA), rabbit anti-actin (Sigma-Aldrich); secondary antibodies: rabbit anti-goat, goat anti-rabbit (both Agilent/Dako, Santa Clara, CA, USA).
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2

Visualizing Mitochondrial Dynamics Proteins

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Cell extract preparation was performed as described previously (Bienholz et al. 2017 (link)). The shown proteins were visualised using a rabbit antibody against Phospho-Drp1-S637 (Cell Signaling, Danvers, Massachusetts, USA, #4867), Phospho-Drp1-S616 (Cell Signaling, #4494), Drp1 (Cell Signaling, #5391), Opa1 (Cell Signaling, #80471), Fis1 (Thermo Scientific, Waltham, Massachusetts, USA, #PA5-22142), Mfn1 (Merck, Darmstadt, Germany, #ABC41), Caspase-3 (Cell Signaling, #9662), Mff (Cell Signaling, #84580), Phospho-Mff (Cell Signaling, #49281), MiD51 (Proteintech, Rosemont, Illinois, USA, 20164-1-AP), MiD49 (Proteintech, 28718-1-AP) and a mouse antibody against Oma1 (Santa Cruz, Dallas, Texas, USA, sc-515788) and Mfn2 (Abcam, Cambridge, United Kingdom, #ab56889), all in 1:1000 dilution. Anti-rabbit IgG (Sigma-Aldrich, St. Louis, Missouri, USA, #A8275) and anti-mouse IgG (Sigma-Aldrich, #A4416) conjugated with peroxidase was used as secondary antibody in 1:5000 dilution. The chemiluminescence signals (SuperSignal™ West Femto Maximum Sensitivity Substrate, Thermo Fisher Scientific, Waltham, Massachusetts, USA) were recorded using the gel documentation system Fusion Pulse 6 (Vilber Lourmat, Eberhardzell, Germany) and quantified by the software Bio1D (Vilber Lourmat, Eberhardzell, Germany). Gels stained with Coomassie were used as a loading control.
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3

Quantitative Protein Analysis via Western Blot

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HGFs were trypsinized and lysed with a protein extraction reagent. The concentration of protein was recorded sequentially using the Bradford Kit (Beyotime) and the microplate spectrophotometer (Bio-Tek, Epoch 2) at 595 nm wavelength. Proteins (20 μg) were loaded and then electro-transferred to a polyvinylidene difluoride (PVDF) membrane, which was incubated subsequently with specific primary antibodies as previously described (Wang X. et al., 2016 (link)). Ultimately, the protein bands were quantified using the imaging system (Vilber, Fusion Pulse 6).
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4

Western Blot Analysis of GLUL and Actin

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Samples were lysed in RIPA (Sigma-Aldrich) separated by 12% SDS-PAGE and transferred to PVDF membranes, blocked with 5% milk (Sucofin) in TBS buffer with 0.1% Tween for 1 h, and incubated with primary antibodies overnight (GLUL; rabbit-anti-human/mouse, (Abcam Cat#197024, RRID: AB_10704544) and Actin; rabbit-anti-human/mouse, (Sigma-Aldrich Cat #A2066, RRID: AB_476693)). On the next day, membranes were washed and then incubated with the following secondary antibody for 1 h at RT: goat-anti-rabbit HRP (DakoCytomation Cat #P0448, RRID: AB_2617138). Detection was performed by chemiluminescence (ECL, Amersham Bioscience) and analyzed using the chemiluminescence system Fusion Pulse 6 (Vilber Lourmat).
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5

Western Blot Analysis of Transfected Cells

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24 h post-transfection, cells were treated with lysis buffer (50 mM Tris–HCl pH 8.0, 100 mM NaCl, 5 mM EDTA, 1% Triton X-100 supplemented with chymostatin, leupeptin, antipain and pepstatin) on ice for 10 min. After centrifugation at 21,000 × g for 10 min at 4 °C, supernatants of lysates were mixed with reducing sample buffer (+DTT) and incubated 5 min at 95 °C. Samples were loaded on a 10% SDS–PAGE gel and transferred to PVDF membrane. After blocking, membranes were incubated with primary antibody anti-V5 mouse monoclonal antibody (1:5000; Invitrogen) or anti-actin (1:2000; MP Biomedicals) at 4 °C overnight and HRP-conjugated goat anti-mouse secondary antibody 1 h at room temperature. Membranes were imaged by the ECL detection system using FUSION-PULSE.6 (VILBER).
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6

Protein Analysis of BP's Effect on CSCs

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In order to examine the protein regulation of BP on CSCs, total proteins were collected and analyzed by Western blot. Cells after BP treatment were trypsinized and collected by centrifugation. Cell pellets were washed with PBS, and lysed on ice for 30 min with 100 μL of lysis buffer. Thereafter, the protein supernatants were collected after being centrifuged at 13,000 rpm at 4 °C for 20 min. The concentration of protein was quantified by BSA protein assay kit. Electrophoresis was performed on 6%–15% SDS-PAGE electrophoresis system. Separated proteins were then transferred onto polyvinylidene difluoride (PVDF) membranes. The membranes were blocked in 5% non-fat milk or 2% BSA for 1 h at room temperature, and then incubated at 4 °C with primary antibodies. Membranes were washed three times with PBST (containing 0.1% Tween 20) and incubated with HRP-conjugated secondary antibody for 1 h at room temperature. All proteins were performed using enhanced chemiluminescence reagent and detected by image detection system (FUSION Pulse 6, Vilber lourmat, Marne-la-Vallée, France).
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7

Western Blot Analysis of VDR

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Whole cell lysates were prepared using RIPA buffer (Sigma-Aldrich) and quantified with the Qubit Protein Assay Kit (Thermo Fisher Scientific). Samples were separated by 12% SDS-PAGE and transferred to PVDF membranes, blocked with 5% milk (Sucofin) in TBS buffer with 0.1% Tween for 1 h, and incubated with primary antibodies overnight: anti-VDR ((D2K6W) Cell Signaling Technology, Danvers, MA, USA, clone or anti-actin (Sigma Aldrich). Membranes were incubated with secondary antibodies for 1 h at RT and analyzed using the chemiluminescence system Fusion Pulse 6 (Vilber Lourmat).
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