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9 protocols using olaparib

1

Targeted Cancer Therapy Compound Evaluation

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YHP-836 was synthesized in-house. PARP1/2 inhibitor olaparib was purchased from TargetMol, United States. Temozolomide (TMZ), topotecan, cisplatin, and adriamycin were purchased from J&K Scientific (Beijing, China). Anti-γH2AX and anti-RAD51 were obtained from Cell Signaling Technology (Danvers, MA, United States). An anti-β-actin antibody was purchased from Santa Cruz Biotechnology (Dallas, TX, United States). Anti-PARP1 and anti-PARP2 antibodies were from Abcam (Cambridge, United Kingdom). Anti-PAR antibody and HT PARP pharmacodynamic assay kit were purchased from Trevigen (Gaithersburg, MD, United States). The subcellular protein fractionation kit was purchased from Thermo Scientific (Rockford, IL, United States).
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2

Cytotoxicity assay of drug compounds

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Cisplatin, metformin and fenformin were purchased from Sigma-Aldrich (St. Louis, MO, USA); carboplatin from Adipogen (San Diego, CA, USA); paclitaxel from ChemieTek (Indianapolis, IN, USA); doxorubicin and rotenone from Merck; Yondelis (ET-743) from PharmaMar (Madrid, Spain); olaparib from TargetMol (Boston, MA, USA); oxaliplatin, rucaparib, niraparib, KU55933 (ATM inhibitor), AZD6738 (ATR inhibitor), AZD7762 (Chk1 inhibitor) and AZD1775 (Wee1 inhibitor) from Axon Medchem (Groningen, The Netherlands). All the drugs were dissolved in DMSO or water as stock solutions and diluted in medium just before treatment. For cytotoxicity experiments, cells were seeded at 1000–2000 cells/mL and treated with different drug concentrations in 96-well plates 48 h after seeding. After five days of treatment, cell viability was examined with the MTS assay system (Promega Corporation, Madison, WI, USA), and absorbance was acquired using a microplate reader (GloMax Discover, Promega Corporation). Drug concentrations inhibiting growth in 50% of the cells (IC50) were calculated for each cell line, with the interpolation method on Prism 9.5.1 (GraphPad Software, La Jolla, CA, USA). All the experiments were run at least three times in sestuplicate.
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3

MTT Assay for Cell Viability Assessment

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The survival was determined by MTT assay (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide) (Sigma-Aldrich/Merck, St. Louis, MO, USA). First, the cells were seeded in 96-well plates at a density of 2 × 104 cells per well. On day two, four, and seven, the cells were treated with Olaparib (TargetMol, Boston, MA, USA), M1, M2, M3, or Cpd1 at 15 different treatment concentrations increasing up to 1024 µM in fresh culture medium each. On day nine, the MTT assay was performed. MTT was first dissolved in 1x PBS (Gibco/ThermoFisher Scientific) to a concentration of 5 mg/mL. Then, the 5 mg/mL MTT solution was diluted in OptiMEM (Gibco/ThermoFisher Scientific) and for HCC-1937 in RPMI without phenol red (Gibco/ThermoFisher Scientific) to a final concentration of 1 mg/mL. An amount of 100 µL of this solution were added to each well. After an incubation time of 2.5 h at 37 °C, the MTT solution was removed and the cells suspended in 200 µL 5% HCl/95% isopropanol (Sigma-Aldrich/Merck). The plates were shaken for 10 min and then the optical density measured at 570 nm with the Tecan Sunrise Photometer (Tecan, Crailsheim, Germany). The MTT experiments were conducted in duplicates and repeated twice each.
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4

Olaparib and BMS-202 Cytotoxicity Assay

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SR‐4835, olaparib and BMS‐202 were obtained from TargetMol (Shanghai, China), and prepared as a stock solution with a concentration of 20 mM and kept in aliquots at –20°C. Propidium iodide (PI) and Annexin V‐FITC were bought from Sigma–Aldrich (Shanghai, China). The following antibodies were used for Western blotting: CDK12 (Cell Signaling Technology: CST, 11973), CDK13 (BOSTER, A05292‐1), RNA Pol II CTD Ser2 (Bethyl, A300‐654A), total RNA Pol II (Bethyl, A300‐653A), RNA Pol II CTD Ser5 (Bethyl, A304‐408A), Poly ADP‐Ribose Polymerase (PARP) (CST, 9532), Caspase‐3 (CST, 9662), Survivin (Proteintech, 10508‐1‐AP), active caspase‐3 (CST, 9661), Bcl‐XL (Santa, SC‐634), Bcl‐2 (Millipore, 05–729), Mcl‐1 (Proteintech, 16225‐1‐AP), γH2AX (CST, 9718S), CCDC137 (Abcam, ab185368) and β‐actin (Sigma–Aldrich, A1978).
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5

In Vitro Cytotoxicity Experiments Protocol

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For in vitro experiments, IS21 (ChemSpace, Riga, Latvia), ABT-199, dabrafenib, trametinib, ABT-263, S63845 (Selleckchem, Houston, TX, USA), WEHI-539 (MedChem, Monmouth Junction, USA) and olaparib (Targetmol, Wellesley Hills, MA, USA) were dissolved in DMSO (20 mM, Sigma-Aldrich, St. Louis, Missouri, USA) and further diluted in complete medium. The pan-caspase inhibitor zVAD-fmk (zVAD, Sigma-Aldrich) was dissolved in DMSO. Doxorubicin (50 mg/25 ml, Pfizer, New York, NY, USA) and vincristine (1 mg/ml, Teva Italia, Milan, IT) were serially diluted in complete medium. As control, cells were treated with 0.1%–0.4% DMSO, depending on the highest dose of treatment used for each experiment. DMSO at these concentrations did not affect cell proliferation.
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6

Synergistic Effects of DOT1L and PARP Inhibitors

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DOT1L inhibitor SGC0946 and PARP inhibitors Olaparib, Niraparib, Veliparib, and Talazoparib were all purchased from TargetMol. For drug synergy studies, ovarian cancer cells (4000/well) were seeded in 96-well plates for overnight incubation and treated with different doses of inhibitors for 5 days. Cell viability was evaluated by measuring the 450 nm absorbance with the Cell Counting Kit-8 (CCK-8) (YEASEN, Shanghai, China). Each concentration was tested in triplicate. The IC50 value was calculated and performed in GraphPad Prism v8.0. Drug synergistic effects were calculated based on the CompuSyn software or SynergyFinder. CI < 1 indicated synergism, CI = 1 indicated additive effects, and CI > 1 indicated antagonism.
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7

Determining PARP Inhibitor IC50 Values

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To determine 50% inhibitory concentration (IC50) values of Olaparib (AZD2281; TargetMol, USA), Niraparib (MK-4827; TargetMol, USA), Veliparib (T2591; TargetMol, USA), and Talazoparib (T6523, TargetMol, USA), we measured the cell proliferation rate using Cell Counting Kit-8 (CCK-8) (YEASEN, Shanghai, China). IC50 values were analyzed using GraphPad Prism Version 8.0.
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8

Cell Line Maintenance and Experimental Treatments

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UM cell lines (92.1, Mel202, Mel270, OMM2.2, OMM2.3, OMM2.5, OMM1, OCM1, Mel285, and Mel290), provided by Dr. Martine Jager (Leiden University), were maintained as previously described [5 (link)]. Y‐MESO‐14 was a gift from Dr. Yoshitaka Sekido (Aichi Medical University), and NCI‐H2373 was purchased from ATCC. These two mesothelioma cell lines were maintained as previously described [27 (link)]. Human embryonic kidney 293T cells were from ATCC and cultured in Dulbecco’s modified Eagle’s medium with 10% fetal bovine serum. All media supplemented with 50 μg·mL−1 penicillin/streptomycin. Cells were maintained at 37 °C with 5% CO2 and confirmed to be free of mycoplasma. Olaparib (PARP inhibitor, TargetMol) and temozolomide (alkylating agent, Sigma‐Aldrich, Shanghai, China) were pre‐prepared as stock solution in DMSO and used at concentrations indicated in figures.
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9

Cytotoxicity Evaluation of Anti-Cancer Drugs

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Olaparib was purchased from TargetMol; rucaparib, niraparib, KU55933 (ATM inhibitor), AZD6738 (ATR inhibitor), AZD7762 (Chk1 inhibitor) and AZD1775 (Wee1 inhibitor) from Axon Medchem; cisplatin from Sigma Adrich; carboplatin from Adipogen; paclitaxel from ChemieTek; doxorubicin and verapamil from Merck. All the drugs were dissolved in DMSO as stock solutions and diluted in medium just before treatment. For cytotoxicity experiments, cells were seeded at 1000 cells/mL and treated with different drug concentrations in 96-well plates 48 h after seeding. After five days, cell viability was examined with the MTS assay system (Promega) and absorbance was acquired using a plate reader (GloMax Discover, Promega). Drug concentrations inhibiting growth in 50% of the cells (IC50) were calculated for each cell line, with the interpolation method on Prism 8.3.0 (GraphPad Software).
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