The largest database of trusted experimental protocols

8 protocols using hnrnpc

1

HNRNPC Expression Quantification Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Firstly, total RNA was isolated from transfected cells by TRIzol method. Then RNA was reverse-transcribed into cDNA using cDNA reverse transcription kit (takara, Japan). Finally, fluorescence quantitative PCR was performed using designed specific primers and SYBR green I fluorescent dye detection. The PCR primer sequence is HNRNPC-F: GTCCCCTCTACTCAGTTCCTCAT, HNRNPC-R: TGGAAGAAGATCCCCGTTGT. A total of 30 cycles are set (denaturation: 95°C/2 minutes, annealing: 50°C/2 minutes, extension: 60°C/1 minute).
We used RIPA Lysis Buffer to prepare cell lysates from transfected cells. We placed the lysate on ice for a few minutes and pipetted to fully lyse the cells. Then, we transferred it to a 1.5 mL centrifuge tube and shook vigorously for 30 seconds. Finally, it was centrifuged at 12,000 rpm at 4°C for 15 minutes, and we aspirated the supernatant for subsequent electrophoresis. The electrophoresis was run on an SDS-PAGE gel. The primary antibody was HNRNPC (rabbit source, Abcam), and the secondary antibody was goat anti-rabbit IgG (sigma).
+ Open protocol
+ Expand
2

Western Blot Analysis of Protein Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Equal amounts of each protein diluted in 5 × sodium dodecyl sulfate (SDS) loading buffer (Beyotime, Shanghai, China) were separated using SDS–polyacrylamide gel electrophoresis (PAGE) and subsequently transferred to polyvinylidene fluoride (PVDF) membranes (Millipore, Massachusetts, USA). After being blocked at room temperature for 1 h, the membranes were incubated with primary antibodies against GAPDH (1:1000, Cell Signaling Technology, Massachusetts, USA, 5174), p21 (1:1000, Abcam, Cambridge, UK, 109,520), p53 (1:1000, Cell Signaling Technology, 48,818), p16 (1:1000, Abcam, 51,243), SERPINE2 (1:1000, Abcam, 134,905), YBX3 (1:2000, Bethyl, Montgomery, USA, A303-070A), β-Tubulin (1:1000, Cell Signaling Technology, 2128), PCNA (1:1000, Abcam, 29), Histone3 (1:1000, Abcam, 176,842), ubiquitin (1:1000, Abcam, 134,953), HNRNPC (1:1000, Abcam, 133,607), YBX1 (1:1000, Proteintech, Rosemont, USA, 20,339–1-AP), and ZO-1 (1:1000, Proteintech, 21,773–1-AP) overnight at 4 °C. The membranes were washed 3 times, incubated with corresponding horseradish peroxidase (HRP)-conjugated secondary antibodies (1:3000, BOSTER, California, USA, BA1050, BA1054) for 1 h at room temperature and then washed 3 times with TBST. Specific immunoreactive bands were detected using Immobilon Western Chemiluminescent HRP Substrate (Millipore). The mean intensity ratio was analyzed by ImageJ 1.4.
+ Open protocol
+ Expand
3

Western Blot Analysis of RNA-Binding Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Western blots were done as previously described (16 (link)) using the following antibodies: hnRNP L (Abcam, Ab6106), CELF2 (University of Florida ICBR, HL1889), hnRNP C (Abcam, Ab10294), Flag (Cell Signaling Technologies, 2368S).
+ Open protocol
+ Expand
4

Immunoblotting for Antiviral Signaling Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunoblotting was performed as described in our previous study. The antibodies used in this study were as follows: ALKBH5, FTO, RIG-I and HNRNPC purchased from Abcam (Cambridge, MA, UK); MAVS, IKKε, p-IKKε, TBK1, p-TBK1, IRF3, and p-TBK1 purchased from Cell Signaling Technology (Danvers, MA, USA); GAPDH and α-tubulin purchased from Proteintech Inc. (Proteintech, Rocky Hill, NJ, USA). The TBK1/IRF3-specific inhibitor Bay-985 was purchased from Selleck (Houston, TX, USA).
+ Open protocol
+ Expand
5

RNA-Protein Interactions in Nuclear Extract

Check if the same lab product or an alternative is used in the 5 most similar protocols
Radiolabeled RNA was incubated in JSL1 nuclear extract under similar conditions described for the EMSAs. Reactions were incubated for 20 min at 30°C, crosslinked using UV light (254 nm) for 20 min on ice, and digested with 2 ug (final concentration) of RNase T1 and RNase A each for 20 min at 37°C. Reactions were analyzed under denaturing conditions on a 12% gel (Acrylamide/Bis 37.5:1, BioRad), and visualized by autoradiography. Immunoprecipitation following crosslinking was done as described in ref 18 using the following antibodies: CELF2 (UFl Hybridoma Lab, HL1889); HuR (Santa Cruz, sc-5261); hnRNP C (Abcam, ab10294); and hnRNP H (Abcam, ab10374).
+ Open protocol
+ Expand
6

Western Blot Analysis of Key Signaling Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Western blot analysis was performed as previously described (31 (link)) with antibodies specific for 4EBP1, p-4EBP1Thr37/46, rpS6, p-rpS6Ser235/236, S6K, p-S6KThr389, PABPC1, PARP, Caspase 3 (cell signaling), β-actin (Sigma), HNRNP/C, ATIC, RPS3A (Abcam), and SRSF1 (Santa Cruz). Densitometry analysis was completed using ImageLab (Bio-Rad).
+ Open protocol
+ Expand
7

UV Cross-Linking and Immunoprecipitation Protocol for RNA-Binding Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
UV cross-linking assays were performed as previously described (Mallory et al. 2011 (link)). In brief, MKK7 constructs were in vitro transcribed from a T7 promoter and body-labeled with 32P α-UTP. Nuclear extracts from unstimulated or stimulated Jurkat cells were incubated with MKK7 RNAs, UV cross-linked, RNase-digested, and resolved on an SDS-PAGE. For UV cross-linking followed by immunoprecipitation, UV cross-linking reactions after RNase digestion were incubated with corresponding primary antibodies overnight at 4°C followed by incubation with protein G sepharose beads (GE) and elution. Antibodies used in immunoprecipitation were as follows: HuR (Santa Cruz Biotechnology, sc-5261), hnRNPC (Abcam, ab10294), CELF2 (University of Florida Hybridoma Laboratory, HL1889), SRp20 (Thermo, 33-4200), and PSIP1 (Bethyl Laboratories, A300-847A).
+ Open protocol
+ Expand
8

Immunoblotting of EMT Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Primary antibodies including: hnRNPC (Mouse, catalog number ab10294; Rabbit, catalog number ab133607), TSG101 (Mouse, catalog number ab83) and CD63 (Mouse, catalog number ab59479) were obtained from Abcam (Cambridge, England); β-catenin (Rabbit, catalog number 8480), Grp94 (Rabbit, catalog number 20292), Snail (Rabbit, catalog number 3879) and Slug (Rabbit, catalog number 9585) were purchased from Cell Signaling Technology (Massachusetts, USA); E-cadherin (Mouse, catalog number 60335-1-Ig) and GAPDH (Mouse, catalog number 60004-1-Ig) were from Proteintech (Wuhan, China); Vimentin (Rabbit, catalog number A11952) and N-cadherin (Rabbit, catalog number A3045) were from ABclonal (Wuhan, China). Mg132 was purchased from Meilunbio (Dalian, China), XAV-939 was purchased from Target Molecule Corp. (Massachusetts, USA).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!