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2 061 protocols using bca kit

1

Triptolide Regulates Androgen Receptor Levels

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LNCaP cells were purchased from the Cell Bank of Type Culture Collection of Chinese Academy of Sciences and cultured in RPMI-1640 media (GE Healthcare Life Sciences HyClone laboratories, Logan, UT, USA) with 10% fetal bovine serum (FBS, Clark Bioscience, Richmond, VA, USA).
To detect the effect of triptolide on cell growth, LNCaP were plated on 96-well plate (1.5 × 105/well) and treated with triptolide (100 nM). The viable cells were detected with SRB assay [8 (link)].
To detect the AR protein level, after being plated on 6-well plates, LNCaP cells were pre-treated with CHX (20 ng/mL) for 2 h and then triptolide (100 nM) was added to the media. After co-treatment with CHX and triptolide for 24 h, the cells were lysed with RIPA lysis buffer (Beyotime Biotechnology, Haimen, Jiangsu, China) and the protein concentration was detected with BCA kit (Beyotime Biotechnology, Haimen, Jiangsu, China).
To detect the role of calpain in triptolide mediated AR degradation, calpain inhibitor ALLM and calcium chelator BAPTA-AM were used. After co-treatment with triptolide and ALLM (50 μM and 100 μM), PMSF (100 μM) or BAPTA-AM (10 μM) for 24 h, the cells were lysed with RIPA lysis buffer (Beyotime Biotechnology, Haimen, Jiangsu, China) and the protein concentration was detected with BCA kit (Beyotime Biotechnology, Haimen, Jiangsu, China).
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2

Quantitative Protein Expression Analysis

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The total protein was extracted from the liver tissues using a Total Protein Extraction kit (Beyotime, Shanghai, China) and quantified using a BCA kit (Beyotime, Shanghai, China). Equal amounts of protein per sample (30 μg) were separated on a 10% SDS–PAGE and electroblotted onto nitrocellulose membranes (Pall Corporation, Port Washington, NY, USA). After blocking with 5% non-fat milk for 2 h, the blots were incubated overnight with anti-VEGF (1:2000; Wanleibio, Shenyang, Liaoning, China), anti-Cyclin D1 (1:1000; Wanleibio, Shenyang, Liaoning, China), anti-NLRP3 (1:2000; Bioss, Beijing, China), anti-Wnt2 (1:1000; Abcam, Waltham, MA, USA), anti-β-catenin (1:10,000; Abcam, Waltham, MA, USA), anti-P-P65 (1:500; Santa, Dallas, TX, USA), anti-P65 (1:3000; Proteintech, Wuhan, Hubei, China), anti-caspase-1 (1:500; Santa, Dallas, TX, USA), anti-ASC (1:500; Santa, Dallas, TX, USA), anti-GSDMD (1:2000; Affinity, Liyang, Jiangsu, China), and anti-β-tubulin (1:1000; Wanleibio, Shenyang, Liaoning, China) primary antibodies at 4 ℃. The blots were washed with TBST and incubated with HRP-conjugated anti-IgG for 2 h. The positive bands were detected using an enhanced ECL reagent (Meilunbio, Dalian, Liaoning, China) on an AI600 System (GE Healthcare, Pollards Wood, UK). The relative protein expression was quantified using ImageJ software and normalized against the β-tubulin control.
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3

Comprehensive Western Blot Analysis Protocol

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Western blot analysis was performed as previously described [24 (link)]. Briefly, total protein was isolated from cells using the RIPA lysis buffer (Beyotime). After measuring the protein concentration using a BCA kit (Beyotime), a total of 40 μg protein was separated by 8% or 15% sodium dodecyl sulfate-polyacrylamide gel electrophoresis gels and transferred onto the polyvinylidene fluoride membranes (Merck Millipore, Darmstadt, Germany). Membranes were subsequently blocked with 5% skim milk at room temperature for 2 h, and incubated at 4°C overnight with primary antibodies: anti-CCT3 (Abcam, Cambridge, UK, ab225878, 1:2,000), anti-cyclin B1 (Abcam, ab181593, 1:2,000), anti-cyclin dependent kinase 1 (CDK1, Abcam, ab133327, 1:10,000), anti-Cleaved Caspase-3 (Abcam, ab2302, 1:500), anti-STAT3 (Abcam, ab119352, 1:5,000), anti-p-STAT3 (Abcam, ab76315, 1:5,000), anti-JAK2 (Cell Signaling Technology, Inc., MA, USA, #3230, 1:1,000), anti-p-JAK2 (Cell Signaling Technology, #4406, 1:1,000), and anti-GAPDH (Beyotime, AG019, 1:1,000). After incubation with corresponding horseradish peroxidase-conjugated secondary antibodies (Beyotime, A0208, A0216, 1:5,000) at room temperature for 2 h, membranes were visualized under a ChemiDoc XRS+ system (Bio-Rad). The protein bands were quantified using the Image J software (National Institutes of Health, Bethesda, USA).
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4

Protein Quantification and Western Blot Analysis

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Total protein of tissues and cells was extracted using the RIPA buffer (Abcam, Cambridge, UK) and subsequently quantified using a BCA Kit (Beyotime, Shanghai, China). Western blot analysis was performed as described by Mahmood and Yang
[17] (link). In brief, the proteins were separated by SDS-PAGE before being transferred onto PVDF membrane. Then, the membrane was blocked with skimmed milk for 1.5 h, followed by overnight incubation with primary antibodies and subsequent 2-h incubation with secondary antibodies. Finally, protein bands were visualized using the ECL Substrate Kit (Abcam) and quantified using Image J software. The antibodies used in this study were all purchased from Abcam and used at the following dilutions: anti-S100A6 (#ab181975; 1:10,000), anti-GAPDH (#ab8245; 1:8000), anti-osteocalcin (OCN) (#ab93876; 1:1000), anti-osteopontin (OPN) (#ab166709; 1:500), and Goat Anti-Rabbit IgG H&L (HRP) (#ab6721; 1:3000).
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5

Protein Extraction and Immunoblotting Analysis

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The total, cytoplasmic and nuclear proteins were isolated using protein extraction kit (Beyotime) according to the manufacturer’s instructions. After quantitation (BCA kit, Beyotime), protein was separated by electrophoresis on 10% SDS-polyacrylamide gels and transferred onto PVDF membrane. Antibodies against β-actin, β-catenin, smooth muscle myosin heavy chain protein (SM-MHC), Notch1 (Santa Cruz, CA, USA), GAPDH, histone H3, phospho-p38, phospho-ERK1/2 (Cell Signaling Technology, MA, USA) and smooth muscle α-actin (SM α-actin) (Sigma) were used to probe with the interest blots. Finally, protein expression was detected with HRP-conjugated second antibody (Santa Cruz) and ECL (Pierce, IL, USA) luminescence method.
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6

Intestinal Tight Junction Protein Analysis

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Murine intestines underwent lysis in lysis buffer, and protein quantification was performed via a BCA kit (Beyotime, China). Equal protein amounts were then electrophoresed on SDS/PAGE in a Bio-Rad Mini-PROTEAN apparatus, prior to transfer to PVDF membranes (Bio-Rad, Marnes-la-Coquette, France), which then underwent a 1-hour blocking in 5% nonfat milk (w/v) at RT, with subsequent ON exposure to primary antibodies at 4°C. The employed primary antibodies are listed as follows: anti-Occludin antibody (13409-1-AP); anti-ZO-1 antibody (21773-1-AP); and anti-GAPDH antibody (60004-1-Ig). All aforementioned antibodies were used in a 1:1000 dilution, and were purchased from Proteintech, USA. Subsequently, the separated proteins were treated with secondary antibodies: HRP-goat anti-mouse IgG (115-035-003) and HRP-goat anti-rabbit IgG (111-035-144) from Jackson ImmunoResearch. Protein band visualization was done with ECL chemiluminescence imaging system, and quantification via ImageJ software (Version 1.50i; National Institutes of Health, Bethesda, MD, USA). Finally, we calculated the IntDen (target protein)/IntDen (GAPDH) ratios.
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7

Protein Expression Analysis of Rat Femurs Post-Implantation

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At 12 weeks post‐implantation, the rat femurs (3 mm around the implant) were scraped in lysis buffer and centrifuged at 12,000 g/min at 4 °C for 10 min. The protein concentration was measured using a BCA kit (Beyotime, Shanghai, China). Proteins were separated using sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS‐PAGE), electrophoresed, and blotted onto a polyvinylidene difluoride (PVDF) membrane. After being blocked with 5% BSA/TBST for 1 h, the membrane was incubated with primary antibody at 4 °C overnight. The next day, the membrane was washed with TBST three times and then incubated with secondary antibody (1:5000 dilution) (SAB, Baltimore, MD, USA) for 1 h. The membrane was then washed again with TBST three times. The bands were exposed and imaged with Quantity One software (Bio‐Rad, Richmond, CA, USA). BMP‐2, TGF‐β1, VEGF, OPN, OCN, and RUNX2 were selected for Western blots. The primary antibodies used in this study were as follows: BMP‐2 (1:1000, Abcam), TGF‐β1 (1:5000, Abcam), VEGF (1:500, Abcam), OPN (1:500, Abcam), OCN (1:500, Abcam), RUNX2 (1:1000, Abcam) and GAPDH (1:10000, Abcam).
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8

Glucose Uptake Assay in L6 Myotubes

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L6 cells were seeded in a 96-well transparent plate with low density in 100 µL DMEM. After 6 days of differentiation, as described above. L6 myotubes cells were treated with B4 (64, 16, 4 μg/mL), and PBS buffer dissolved in 100 μL DMEM medium, six wells were repeated in each group. After 24 h of treatment, the cell supernatant was taken, and the glucose concentration was detected by the glucose oxidase method using an automatic biochemical analyzer (HITACHI, Japan). Glucose consumption in the culture medium reflects intracellular glucose uptake.
L6 cells were cultured in a 6-well transparent plate. There were four wells in the normal group and the B4-treated groups. After B4 (64, 16, 4 μg/mL) treatment for 24 h, cells were collected and the intracellular glucose was lysed according to the instructions of the glucose content assay kit (APPLYGEN, Beijing, China), the supernatant of lysate was used to measure the glucose content using the oxidase method, and the protein in the precipitate was detected by a BCA kit (Beyotime, Beijing, China). The amount of glucose per gram of protein was calculated and deemed as glucose uptake.
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9

Comprehensive Protein Analysis of BC Tumors

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RIPA lysis buffer containing protease inhibitors was used to lyse and BC tumor tissue samples, which were then spun for 20 minutes at 12,000 rpm at 4°C. Supernatants were then collected, with a BCA kit (Beyotime Institute of Biotechnology, Nantong, China) being used to quantify the protein contents within each sample. Samples were then boiled for 15 minutes in sodium dodecyl sulfate sample buffer, after which equal quantities of protein were separated via sodium dodecyl sulfate polyacrylamide gel electrophoresis and transferred to polyvinylidene difluoride membranes. Membranes were in turn blocked for 2 hours at room temperature with 5% skim milk in TBST. Blots were then probed with rabbit polyclonal anti-RIOK1 (1:1,000, Proteintech, Wuhan, China), anti–E-cadherin (1:1,000, Proteintech), anti-vimentin (1:1,000, CST, Danvers, MA); anti–N-cadherin (1:1,000, CST); PI3K (1:1,000, CST); p-AKT (1:2,000, CST); AKT (1:1,000, CST); cyclin B1 (1:500, Proteintech); p-ERK1/2 (1:1,000, Abcam, Cambridge, UK); ERK1/2 (1:2,000, Abcam). After washing in TBST, the membran washed thrice in TBST and incubated for 2 hours with appropriate HRP-conjugated secondary antibodies (1:1,000, Santa Cruz Biotechnology, Santa Cruz, CA). Enhanced che-miluminescence (Thermo Scientific) was then employed for protein detection, with analyses being repeated in triplicate.
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10

Western Blot Analysis of Lung Proteins

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Lung tissues were lysed in precooled RIPA cleavage buffer (Beyotime Biotechnology) for 4 h. Protein concentration was determined using a bicinchoninic acid (BCA) kit (Beyotime Biotechnology). Briefly, 60 μg of total protein was separated via 12% polyacrylamide gel electrophoresis and transferred onto a polyvinylidene fluoride membrane. The membrane was blocked with 5% skim milk for 1 h at room temperature and incubated with primary antibodies (1:1,000) for 6–8 h at 4 °C. After washing with Tris-buffered saline/0.1% Tween 20, the membrane was incubated with the secondary antibodies (1:5,000) for 2 h at 37 °C. Bands were detected using chemiluminescent horseradish peroxidase substrate and quantitatively analysed using Quantum 5.2 software (Bio-Rad). The relative level of immune response was assessed as a grey value and standardised against the reference protein (glyceraldehyde 3-phosphate dehydrogenase) using ImageJ software.
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