The largest database of trusted experimental protocols

150 protocols using hcp 2

1

Extracellular Matrix Composition Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The extracellular matrix composition was evaluated by electron microscopic examination. For scanning electron microscopy (SEM), fresh and decellularized tissues were fixed with 2% glutaraldehyde in 0.1 M PBS at 37°C for 1 h, washed with PBS twice, and dehydrated through a graded series of ethanol. All specimens were critical point dried in an HCP-2 (Hitachi, Tokyo, Japan) and coated with platinum using an HCP-2 (Hitachi). Images were observed and captured using an S-4300 (Hitachi). For transmission electron microscopy (TEM), specimens were fixed, dehydrated, and embedded in Epon 812 (Sigma-Aldrich). Ultrathin sections (70 nm) were generated by using an EM UC7 (Leica, Wetzlar, Germany) and stained with 2% uranyl acetate and 1% phosphotungstic acid (Sigma-Aldrich), pH 3.2. TEM images were captured at 100 kV on a HT7700 Bio-TEM (Hitachi).
+ Open protocol
+ Expand
2

Comparative Electron Microscopy of Plant Calli

Check if the same lab product or an alternative is used in the 5 most similar protocols
To further compare the cytological differences between the calli and different structures, transmission and scanning electron microscopy were performed. The calli of different structures were selected and divided into sections of 3 mm × 3 mm. The samples were fixed with 2.5% glutaraldehyde for longer than 4 h in PBS (0.1 M, pH 7.0), washed with the same buffer, post-fixed with 1% OsO4 in phosphate buffer (0.1 M, pH 7.0) for 1–2 h, dehydrated for 15–20 min for each step in a graded series of ethanol (30, 50, 70, 80, 90, 95, and 100%), and transferred to a 1:1 mixture of alcohol and iso-amyl acetate for 0.5 h, before being transferred to pure iso-amyl acetate for 1 h. The samples were also dehydrated in an HCP-2 critical point dryer (HCP-2, Hitachi, Japan) with liquid carbon dioxide (CO2). Further, gold–palladium was utilized to coat the dehydrated samples in an E-1010 Ion Sputter (E-1010, Hitachi, Japan) for 4–5 min, which we observed using a Model SU-8010 SEM (SU-8010, Hitachi, Japan).
+ Open protocol
+ Expand
3

SEM Analysis of Solid-State Fermentation

Check if the same lab product or an alternative is used in the 5 most similar protocols
After fixation with 2.5% glutaraldehyde for 2 days, the samples from different treatments were immediately dehydrated in 10 mL of ice-cold 200 proof ethanol (Sigma-Aldrich), point-dried in a critical point dryer (HCP-2, Hitachi High-Technologies Corporation, Japan) and coated with 60% Au/Pd in a sputter coater (Sputter Coater Baltec SCD500, Bal-Tel) [43 (link)]. The surface morphologies of different samples were observed by using an S-4800 II field emission scanning electron microscope (Hitachi, Japan). The respiratory rate of NJAU4742 strain during the solid-state fermentation process was evaluated by tracking the release of CO2. Briefly, the triangular flasks of solid-state fermentations were sealed with a parafilm 2 h before sampling. When sampling, 20 mL of gas in the triangular flask was extracted with a syringe and then injected into the gas sampling bag (E-SWITCH, China), and the contents of CO2 was determined by a gas chromatography (Agilent 7890A) equipped with Porapak Q column and a flame ionization detector (FID) according to Zhang et al. [44 (link)] with some modification: 500 µL of gas were injected through a septum with the temperature of 80 °C, and the carrier gas (N2) flow-rate was 30 mL min−1; meanwhile, the temperature of the methanizer and detector were set as 450 °C and 250 °C, respectively.
+ Open protocol
+ Expand
4

Scanning Electron Microscopy of Fungal Growth and Straw Decay

Check if the same lab product or an alternative is used in the 5 most similar protocols
The growth of fungal mycelia and the degree of straw decay in solid fermentation samples inoculated with A. fumigatus Z5 spores for 4 days were observed by scanning electron microscopy. The rice straw in the solid fermentation sample was first collected, cut into a certain size with a sharp blade and washed [52 ], and then fixed with a fixing solution (2.5% glutaraldehyde), followed by dehydration using increasing concentrations of ethanol (from 20 to 98%, v/v) and acetone (from 30 to 90%, v/v); finally, the critical point dryer (HCP-2, Hitachi High-Technologies Corporation, Japan) was used to critically dry the sample and a layer of nanometer thick Au/Pd alloy layer was sprayed using a Cressington 208 HR high-resolution sputter coater (Cressington, UK). Imaging can be performed using the Hitachi S-4800 FE-SEM (Hitachi, Japan) after sample preparation.
+ Open protocol
+ Expand
5

Scanning Electron Microscopy of Worms

Check if the same lab product or an alternative is used in the 5 most similar protocols
Worms were washed in PBS 3 times for 20 min each, fixed in 2.5% glutaraldehyde in 0.1 M phosphate buffer (pH 7.2) for 24 hr at 4˚C and were post-fixed in 1% OsO4 for 2 hr at 4˚C. After serial dehydration steps in 30, 50, 70, 80, 90, and 100% ethanol for 20 min each, a critical-point drying in a Hitachi HCP-2 (Hitachi Ltd, Tokyo, Japan) and sputter-coating with gold-palladium in an Emitech K550 (Emitech Ltd, Ashford, Kent, England), digital photography of worms was taken using a Hitachi S-2400 scanning electron microscope (Hitachi Ltd, Tokyo, Japan).
+ Open protocol
+ Expand
6

Ultrastructural Analysis of Antennal and Ovipositor Morphology in Sitotroga cerealella

Check if the same lab product or an alternative is used in the 5 most similar protocols
Adults of S. cerealella were first anaesthetized by aether. Then, the antennae and extended ovipositors (by applying slight pressure on the abdomen, Fig. 5a) were dissected and immersed in glutaraldehyde (2.5%) at 4 °C for 24 h. After washing in phosphate-buffered saline (PBS, 0.1 M, pH = 7.4) 2–3 times (10 min/wash), samples were post-fixed in 1% osmium tetroxide in PBS at 4 °C for 2 h and then dehydrated in a graded series of ethanol (30%, 50%, 70%, 80%, 95%, and twice at 100%, each for 15 mins).
For scanning electron microscopy, samples were substituted in ethanol-isoamyl acetate (1:1 and 1:2, v/v) and finally immersed in 100% isoamyl acetate for drying in a critical point drier (Hitachi HCP-2, Hitachi, Tokyo, Japan). After mounting on a holder using double-sided adhesive tape, all samples were sputter-coated with gold/palladium (40:60) and observed using a Hitachi jsm-6390 or SU8000 scanning electron microscope.
For transmission electron microscopy, the antennae were embedded in SPI-812 resin. Ultrathin sections were cut with a diamond knife on a Leica UC6 ultramicrotome, double-stained with uranyl acetate and lead citrate and finally observed on a Hitachi HT7700 transmission electron microscope operating.
+ Open protocol
+ Expand
7

Comparative Analysis of Deformed Leg Bones

Check if the same lab product or an alternative is used in the 5 most similar protocols
Embryos treated as described in the first set of experiments (Fig. 1A) were fixed in 2.5% glutaraldehyde in PBS for 2 h at 4°C. Then, the bony skeleton was isolated by immersing the embryos in 4N KOH at 37°C for 1-3 days. This alkaline treatment dissolves all tissues other than bone completely. Isolated deformed leg bones and control normal ones were rinsed thoroughly in PBS and examined by stereomicroscopy. Next, specimens of tibiotarsal bone with prominent deformity and BAPNuntreated control bones were dehydrated in a graded ethanol series and dried with a critical point dryer (HCP-2; Hitachi, Ltd., Tokyo, Japan). The dried specimens were coated in an osmium coater (HPC-1S; Vacuum Device Co., Ibaraki, Japan) for 20 s and observed with a Hitachi S-4300 field emission scanning electron microscope operated at 15 kV.
+ Open protocol
+ Expand
8

Scanning Electron Microscopy of Leaf Morphology

Check if the same lab product or an alternative is used in the 5 most similar protocols
The leaf tips, leaf middle, leaf base of the young leaves (third leaf counting from the tip), and the mature leaves (the 9th leaf) were taken from 4-month-old wild-type and 35S::PtoCYCD3;3 plants. The samples (0.2–0.3 cm) were fixed in FAA solution (70% ethanol: glacial acetic acid: formaldehyde = 18:1:1) for 24 h at 4 °C. Subsequently, the samples were dehydrated in graded ethanol series (70%, 80%, 90%, 95%, and 100% ethanol) for 15 min, and then incubated at 4 °C overnight. The 100% ethanol was replaced sequentially and separately through an isoamyl acetate series (ethanol: isoamyl acetate (3:1), ethanol: isoamyl acetate (1:1), ethanol: isoamyl acetate (1:3), and 100% isoamyl acetate) for 15 min. The samples were then dried using a Critical Point Dryer (HCP-2; Hitachi, Tokyo, Japan) with liquid CO2 and coated with platinum using an Ion Sputter (E-1010; Hitachi, Tokyo, Japan). The coated samples were observed and photographed with a scanning electron microscope (S-4800 FESEM; Hitachi, Tokyo, Japan) at 10 keV. All statistical analyses were performed using SPSS v16.0. Independent-Samples T-test was used.
+ Open protocol
+ Expand
9

Morphological Analysis of Grain Size Genes

Check if the same lab product or an alternative is used in the 5 most similar protocols
During the heading stage, young spikelet hulls of NIL-qTGW7.2aBG1 and NIL-qTGW7.2aXLJ were fixed in 2.5% glutaraldehyde for 12 h at 4°C, and then dehydrated in serial graded ethanol (30, 50, 70, 80, 90, 95, and 100%) before finally preserved in 100% ethanol. The samples were dried in a Hitachi HCP-2 critical point drier, and the cell length and width of the inner glumes were observed by scanning electron microscopy (Hitachi SU-8010, Hitachi, Japan). ImageJ software was used to measure cell numbers and cell size.
+ Open protocol
+ Expand
10

Hydrogel Preparation for SEM Imaging

Check if the same lab product or an alternative is used in the 5 most similar protocols
Before SEM observation, hydrogel samples were immersed in 2.5% glutaraldehyde buffered with PBS at room temperature for at least 4 h, and then samples were washed with PBS to rinse tissue three times. After the fixation steps, samples were dehydrated in graded ethanol solutions (Uni-onward), 30%, 40%, 50%, 60%, 70%, 80%, 90%, and 100% (twice), for 15 min each. Critical-point drying was followed to exchange the ethanol residue by CO2 fluid for drying hydrogels (Hitachi; HCP-2).
Dried hydrogel samples were cut using a scalpel and sputter coated with palladium for scanning electron microscopy (SEM; Jeol; JSM-5310) imaging. SEM was used to investigate surface and interior morphology of the dried sections.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!