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507 protocols using ly294002

1

ADRA2A Regulation of Cervical Cancer

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Human cervical cancer cell lines (HeLa, Caski, C-33A and SiHa) and immortalized epithelial cells of human ectocervix Ect1/E6E7 were supplied by American Type Culture Collection (ATCC, Manassas, USA). All the cells were grown in Dulbecco’s Modified Eagle’s medium (DMEM, Invitrogen, USA) supplemented with 10% fetal bovine serum (FBS; Hyclone, USA) and 1% antibiotics (HyClone, USA) at 37°C in an incubator filled with 5% CO2 atmosphere.
The pcDNA3.1-ADRA2A (pcDNA-ADRA2A group), the empty pcDNA3.1 vector (pcDNA3.1-NC group), ADRA2A siRNA (si-ADRA2A group) and ADRA2A siRNA negative control (si-NC group) were synthesized by GenePharm (Shanghai, China) and then, respectively, transfected to HeLa and SiHa cells by using Lipofectamine 3000 (Invitrogen, USA) following to the manufacturer’s protocols. Moreover, HeLa and SiHa cells in pcDNA-ADRA2A and si-ADRA2A groups were cultured in DMEM supplement with 10 μM LY294002 (a selective PI3K inhibitor, #9901, Cell signaling, USA) for 48 h and then named pcDNA-ADRA2A + LY294002 and si-ADRA2A + LY294002 groups cells.
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2

Culturing Immortalized Wild Type Mouse HSCs

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The immortalized wild type mouse HSC line JS1 was generated and described in our previous studies [18 (link),19 (link)]. The cells were maintained in Dulbecco’s Modified Eagle’s Medium (DMEM) (Gibco, Invitrogen) supplemented with 10% fetal bovine serum (FBS) (Gibco, Invitrogen) and antibiotics at 37 °C in a 5% CO2 humidified atmosphere. In certain experiments, JS1 cells were treated with recombinant mouse Slit2 protein (R&D Biosystems, Minneapolis, MN, USA) at final concentrations of 100 or 500 ng/mL, or PBS vehicle for 24 h. To inhibit Akt, cells were exposed to the Phosphatidylinositol 3-kinase (PI3K) inhibitor, LY294002 (25 μM, Cell Signaling Technology, Danvers, MA, USA) for 1 h. The selection of Slit2 and LY294002 concentration was referred to literatures [20 (link),21 (link)].
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3

Rg1 Attenuates Glucose and Palmitate-Induced Injury in H9C2 Cells

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H9C2 cells were maintained in Dulbecco's modified Eagle's medium (DMEM) supplemented with 10% foetal bovine serum (FBS), 2 mmol/L L‐glutamine and 100 U/mL penicillin at 37°C in a humidified chamber containing 5% CO2. When cell populations reached 40%‐50% confluence, the cultures were exposed to D‐glucose at a final concentration of 22.5 mmol/L (high glucose) and palmitate at a final concentration of 50 μmol/L for 24 hours. The dose of glucose and palmitate was based on a previous publication.11 In addition, some cultured cells were exposed to 5.5 mmol/L D‐glucose as control. After treatment, the monolayer cultures were collected with a gum rubber scraping device and lysed using lysis buffer. Rg1 pre‐treatment was performed by exposing cells to different doses of Rg1 (0, 5, 10, 20 and 40 μmol/L) for 2 hours and then incubating with G&P for another 24 hours. In one inhibition group, H9C2 cells were pre‐treated with 10 µmol/L Ly294002, a specific PI3K inhibitor (Cell Signaling Technology) at 37°C for 2 hours prior to the addition of Rg1, whereas the other inhibition group was treated with Ly294002 only.
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4

Assessing Effects of Caffeic Acid on MC3T3-E1 Cells

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MC3T3-E1 cells were
cultured in various media for 3 days to assess the effects of CA,
as follows: (1) NC group: cells were cultured in regular medium (α-MEM
containing 10% FBS); (2) HGHL group: cells were cultured in HGHL medium
whose main ingredients are regular medium containing 25 mM glucose
and 200 mM sodium PA (Alladin Scientific, China) to mimic diabetic
conditions; and (3) HGHL + CA group: cells were cultured in HGHL medium
containing CA (1, 10, or 100 μM of CA; Alladin Scientific, China).
For the experiments employing LY294002 (inhibitor of PI3K; Cell Signaling
Technology, USA), the cells were pretreated with LY294002 (50 μM)
for 1 h, followed by the designated treatments for an additional 3
days; the experiments detailed in the subsequent sections were then
carried out.
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5

Immortalized HLEB-3 Cell EMT Induction

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Immortalized HLEB-3 cells (American Type Culture Collection, Manassas, VA, USA) were cultured in Dulbecco's modified Eagle's medium (DMEM) supplemented with 10% fetal bovine serum (FBS), placed in a humidified atmosphere containing 5% CO2 at 37°C. The cells were washed with phosphate-buffered saline (PBS), and dissociated with 0.05% trypsin and 0.02% EDTA. As in our previous experiments (7 (link)), when the cell cultures reached a confluence of 80%, the cells were divided into three groups (1×106 cells/ml each). In the first group, the cells were stimulated with 10 ng/ml recombinant human TGF-β2 (Peprotech, Inc., Rocky Hill, NJ, USA) for 24 h in serum-free medium to induce EMT. This was termed the TGF-β2 group. To determine the effect of PI3K inhibition on EMT, the cells were pretreated with LY294002 (Cell Signaling Technology, Inc., Danvers, MA, USA) at an appropriate concentration for 1 h prior to being co-treated with 10 ng/ml TGF-β2 for 24 h. This was termed the LY294002+TGF-β2 group. The control group consisted of cells, which were incubated under conventional conditions without the presence of either TGF-β2 or LY294002 in the medium. Following treatment, the cells were collected for western blot analysis and confocal immunofluorescence assays.
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6

Hormone Treatments and Inhibitor Assays

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Fulvestrant, 4-hydroxytamoxifen, and 17-β estradiol (E2) were purchased from Millipore Sigma (St. Louis, MO). For in vitro hormone treatments, cells were cultured in charcoal-stripped serum (Thermo Scientific, Waltham, MA) containing phenol red-free media for 3–5 days, then treated with 10nM E2 as determined by our dose response and the literature (16 (link)–18 (link)). For clonogenic and growth assays, Fulvestrant and 4-hydroxytamoxifen treatments were at a final concentration of 7.5nM and 5μM, respectively. Palbociclib and SU6656 were acquired from MedChemExpress (Monmouth Junction, NJ) and treatments were at a final concentration of 2.5μM and 5μM, respectively, in DMSO. LY294002 was purchased from Cell Signaling Technologies (Danvers, MA) and in vitro treatments were at a final concentration of 2.5μM LY294002 in DMSO. In vitro venetoclax (Abbvie, Chicago, IL) was at a final concentration of 300nM in DMSO.
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7

Inhibition of PI3K Signaling by LY294002

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The analysis of the effect of the PI3K inhibitor LY294002 (Cell signaling) was done by pre-treating the cells with 50 μM LY294002 during 1h before treatment with LIF. Then LIF induction was performed for 1 to 4 days in the presence of the drug added for the first 24h. The efficiency and specificity of the inhibitor was verified by Western blot analysis on Phospho-AKT (anti-Phospho-ser473 AKT from Cell signaling, data not shown).
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8

In Vitro Ovarian Culture and Analysis

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The in vitro culture of ovaries was performed, as previously reported (14 (link)). Briefly, gonads were isolated from E12.5 embryos and cultured on Transwell-COL membranes (Coaster) supplied with αMEM [Minimum Essential Medium α (Invitrogen) containing 2% fetal calf serum (FCS), 55 μM 2ME (2-mercaptoethanol), 1× penicillin/streptomycin, 1× GlutaMAX, and 150 μM ascorbic acid]. The medium was changed every 2 days. At 4 days of culture, the medium was changed to S10 medium [StemPro (Invitrogen) containing 10% fetal bovine serum (FBS), 55 μM 2ME, 1× penicillin/streptomycin, 1× GlutaMAX, and 150 μM ascorbic acid]. From days 9 to 13, 500 nM ICI182780 (Tocris) was added to the culture. For LY294002 treatment, 25 μM LY294002 (Cell Signaling Technology) was added to the culture from days 6 to 16. In the case of CD and LMB treatments, 25 μM of CD (Merck) and 20 nM of LMB (Cell Signaling Technology) were added to the culture for 6 hours at the end of day 16. On day 16, the cultured ovaries were fixed and sectioned, and then immunohistochemical analysis was performed, as described above. Ovaries from P3 newborn pups were also cultured on Transwell-COL membranes (Coaster) with S10. To supply air pressure to the culture, culture dishes were placed in a gas-pressurized cell culture chamber (AGP-3001S, STREX), and the pressure was adjusted to 33.3 kPa (≒ 250 mmHg).
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9

Virus Quantification and Infectious Center Assays

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Confluent fibroblasts were infected with 0.5 MOI of WT virus and were treated with DMSO, 5μM AG1478 (Caymen Chemical), or 20μM LY294002 (Cell Signaling) at 18 hpi. Virus present in cells and media were quantified by the TCID50 as described previously [10 (link)]. An infectious centers assay was used to quantitate infectious centers produced by CD34+ HPCs, as described previously [75 (link)]. CD34+ HPCs were treated with 10 μM AG1478, 10μM Gefitinib (Cell Signaling), 20 μM LY294002 or DMSO for vehicle control.
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10

Identifying Upregulated Genes in HER2/HER3-PI3K-NF-κB Pathway

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To identify upregulated genes at early time points, we first calculated the sum of the expression values at the seven measured time points (0 and every hour up to 6 h), for each condition as below. Following this, we obtained the average gene expression value by dividing the sum by 7, for each condition. Each condition is as follows: N, no treatment; D, treatment with 1 μg/ml DHMEQ (NF-κB inhibitor); LY, treatment with 1 μm LY294002 (PI3K inhibitor) (Cell Signaling Technology, Beverly, MA, USA); H, stimulation with 100 ng/ml HRG; HD, stimulation with HRG and treatment with DHMEQ; and HLY, stimulation with HRG and treatment with LY294002. The potentially upregulated genes downtream of HER2/HER3-PI3K-NF-κB pathway were selected that satisfied the following criteria: H ≧1.25 N, H ≧1.25 D, H ≧1.25 LY, H ≧1.11 HD and H ≧1.11 HLY. We obtained data at various time points; we considered the differences in expression levels to be significant, even when they were <1.5-fold. Similarly, to identify upregulated genes throughout the time course, we calculated the average gene expression values at the 17 measured time points (0, and every hour up to 16 h), for the aforementioned conditions (GEO accession number GSE64073).
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