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97 protocols using camhb

1

Evaluation of Cefiderocol Activity against A. baumannii

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Nine clinical A. baumannii isolates were used. Seven of nine clinical isolates (AB230, AB231, AB232, AB233, AB235, AB236 and AB237) were used for both in vitro and in vivo studies. The two remaining clinical isolates (AB84 and AB87), were used in previously published in vivo experiments using the same model, and thus used for the in vivo studies as internal controls to validate the stability of the model and the consistency of the in vivo response to the cefiderocol HSR across studies.14 (link),15 (link)The cefiderocol MICs for isolates used for both in vitro and in vivo studies were determined to be 0.12–2 mg/L by the broth microdilution (BMD) method using iron-depleted CAMHB (ID-CAMHB), which was prepared based on CAMHB (Becton-Dickinson, Sparks, MD, USA), as recommended by CLSI (Table 1).16 ,17 In addition, the β-lactamase gene profile was also determined by WGS or PCR analysis (Table S1, available as Supplementary data at JAC-AMR Online) prior to inclusion in the study (Table 1).7 (link),18 (link) Isolates were randomly selected based on the cefiderocol MICs to have a larger population of the isolates with MIC of 1 or 2 mg/L, which is near the susceptibility breakpoint, to evaluate the risk of resistance emergence as well as having a relevant background of genotypically identified β-lactamases.7 (link),12 (link)
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2

Antibiotic Susceptibility of Bacterial Strains

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Bacterial strains and their minimum inhibitory concentrations with regard to tested antibiotics used in this study can be found in the corresponding table in the Supporting Information. A. baumannii and K. pneumoniae strains were routinely grown on LB Lennox 1.5% (w/v) agar plates from glycerol stocks every 3 weeks. For use in biological assays, these strains were grown in cation-adjusted Mueller Hinton broth (CAMHB, BD). A. baumannii strains 4106, 4112, 4119, 3941, and 3942 were obtained from Walter Reed Army Institute for Research (WRAIR). A. baumannii strain 17978mcr-1 and K. pneumoniae strains B9, A5, C3, and F2210291mcr-1 were obtained from Professor Robert Ernst at The University of Maryland, Baltimore. A. baumannii strains 1E4, 1H7, 1A7, 1A3, 1E6, 2A8, 3A4, 2B6, 1G2, and 1F9, K. pneumoniae strains F1, F3, F9, E6, E2, I6, I4, I2, and H2, and P. aeruginosa strains TRPA 161 and TRPA 162 were obtained from Professor Yohei Doi at the University of Pittsburgh. Stock cultures were stored in 25% glycerol and maintained at −80 °C. CAMHB was purchased from BD Diagnostics. Colistin sulfate salt was purchased from Sigma Aldrich (Cat# C4461). All assays were run in duplicate and repeated at least two separate times.
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3

Antimicrobial Susceptibility Testing Methodology

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Full details of the susceptibility testing methodology were published previously (13 (link), 14 (link)). It was complemented by testing with tigecycline, minocycline, and trimethoprim-sulfamethoxazole at Shionogi & Co. (Osaka, Japan) using CLSI standard methods. Cation-adjusted Mueller-Hinton broth (CAMHB) (Becton, Dickinson, Sparks, MD, USA) was used for all antimicrobial susceptibility testing. For cefiderocol, iron-depleted CAMHB (ID-CAMHB) (at a final iron concentration of ≤0.03 μg/ml) was used and was prepared according to the CLSI Subcommittee on Antimicrobial Susceptibility Testing-approved methodology (14 (link)).
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4

Preparing NAC stock solutions

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NAC stock solutions (100 mg/mL) were prepared immediately before use. NAC powder (Zambon, Bresso, Italy) was dissolved in sterile double-distilled water, pH was adjusted at 6.5–6.8 with NaOH, and the solution was filtered through a 0.22-μm membrane filter. All experiments were performed in cation-adjusted Mueller-Hinton broth (CAMHB; Becton Dickinson, Milan, Italy), starting from an appropriately concentrated medium in order to avoid broth dilution when testing high NAC concentrations.
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5

Preparation of N-acetylcysteine Stock Solutions

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N-acetylcysteine stock solutions (100 g/L) were prepared immediately before use, by dissolving N-acetylcysteine powder (Zambon, Bresso, Italy) in sterile double-distilled water, pH adjustment at 6.5–6.8 with NaOH, and filtering through a 0.22-μm membrane filter. All experiments were performed in CAMHB (Becton Dickinson, Milan, Italy), starting from an appropriately concentrated medium in order to avoid broth dilution when testing high N-acetylcysteine concentrations.
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6

Time-Kill Assay of Antibiotic Combinations

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Columbia blood agar (COS) (bioMérieux) were used to culture the isolates. Cation-adjusted Mueller-Hinton broth (CA-MHB) (Becton, Dickinson) was used to perform the time-kill curves, and Mueller-Hinton agar (MH) plates (bioMérieux) were used for the quantification of CFU per milliliter.
The antibiotics used were meropenem, aztreonam, colistin, and amikacin (all from Sigma-Aldrich), and ceftolozane-tazobactam (Zerbaxa; MSD). The antibiotic stocks were prepared according to the Clinical and Laboratory Standards Institute (CLSI). The final concentrations used in the time-kill assays corresponded to the AUC over 24 h (Table 1) (17 (link)– (link)21 (link)).
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7

Liquid and Solid Culture Media Preparation

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The liquid culture media used for BMD and growth kinetics were the following: cation-adjusted Mueller–Hinton broth (CAMHB, Becton Dickinson), Brucella broth (BB, Becton Dickinson), H-medium (MERLIN), CAMHB containing 5% horse blood and 20 mg/L β-NAD (CAMHB-F, according to EUCAST SOP) [36 ], and CAMHB supplemented with 10 mL/L IsovitaleX (CAMHB-X, Thermo Fisher, Waltham, MA, USA). The in-house media were autoclaved for 15 min at 121 °C. Supplements were added when the media had cooled down; afterwards, the pH was adjusted to 7.0 ± 0.2. The solid culture media for agar dilution were prepared by adding 15 g/L agar to the culture media mentioned above.
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8

Evaluation of Cefepime-Taniborbactam Activity

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MIC values were determined using the CLSI broth microdilution reference method with concurrent quality control (30 , 31 ). Taniborbactam was provided by Venatorx Pharmaceuticals, Inc. (Malvern, PA, USA) and tested at a fixed concentration of 4 μg/mL with cefepime (31 ). Other agents were purchased from commercial sources. Broth microdilution panels were prepared at IHMA using cation-adjusted Mueller Hinton broth (CAMHB; Becton, Dickinson) and stored at −70°C until the day of testing.
MICs were interpreted using 2021 CLSI breakpoints (31 ) with two exceptions. Meropenem-vaborbactam MICs for P. aeruginosa were interpreted using EUCAST breakpoints (≤8 μg/mL, susceptible; >8 μg/mL, resistant) (32 ). Cefepime-taniborbactam MICs against both Enterobacterales and P. aeruginosa were interpreted using provisional breakpoints of ≤16 μg/mL (susceptible) and >16 μg/mL (resistant) that were based upon published in vivo efficacy data from neutropenic murine infection models (thigh, complicated urinary tract) (33 (link), 34 (link)) and data from a safety and pharmacokinetics studies in human volunteers (35 (link), 36 (link)). These provisional breakpoints are also supported by probability of taniborbactam target attainment analyses based on simulation of human plasma exposures (J. Dowell, unpublished data).
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9

Standardized Bacterial Culture Protocol

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When not stated otherwise, chemicals, reagents and laboratory utensils were procured from Thermo Fisher Scientific. Bacteria were cultured onto blood (Merck KGaA) or UriSelectTM 4 (Bio-Rad) agar, and CAMHB (Becton, Dickinson and Company) was used in all suspension cultures except for BMD. Sterile filtration was performed using Nalgene filter units (PES 0.1 μm, VWR International LLC).
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10

Meropenem-Vaborbactam Combination Susceptibility

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Bacteria were cultured on Mueller-Hinton agar and tested on cation-adjusted Mueller-Hinton broth (CAMHB) (Becton Dickinson, Sparks, MD). Stock solutions of meropenem (Sandoz, Princeton, NJ) (10 to 50 mg/ml in distilled H2O) and vaborbactam (The Medicines Company, San Diego, CA) (5 to 10 mg/ml in 90% dimethyl sulfoxide) were stored at −80°C until use.
Broth microdilution susceptibility testing was performed according to Clinical and Laboratory Standards Institute methods (40 ), using panels prepared in-house. A checkerboard assay conforming to the Moody procedures described in the Clinical Microbiology Procedures Handbook (41 ) was used to evaluate the effect of various concentrations of vaborbactam on the meropenem MIC.
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