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6 protocols using mhcii 1 a 1 e

1

Multi-parameter Flow Cytometric Analysis of Immune Cell Subsets

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Abs specific for CD19, CD3e, CD4, PD-1, APRIL, CD11c, IL-12p40, Ter119, CD11c, MHCII IA/IE, TACI were purchased from Biolegend; GL7, FAS, CXCR5, CD138, B220, IgG, Siglec, CD19, CD8, CD45RA, Annexin V, and Streptavidin-HRP from BD Biosciences; GR-1, CXCR4, CD3e, CD49b, CD40, CD86, CD80 from eBiosciences; BCMA from R&D Systems. IgM (B7.6) and anti-Fc (2.4G2) were purified from hybridomas. Live/Dead Pacific Orange, Fixable Blue dyes, anti-IgG-Alkaline Phosphatase, anti-IgM- Alkaline Phosphatase, Streptavidin were purchased from Invitrogen/Life Technologies; SDF-1 from Shennendoah Biotechnology; anti-IgG2- Alkaline Phosphatase from Southern Biotech; p-Nitrophenyl Phosphate tablets, 3-amino-9-ethylcarbazole tablets, PNA-biotin, and lipopolysaccharide from Sigma; anti-IgGFc from Jackson Immunoresearch; Brefeldin A from LC Laboratories. IsdB peptide (AA 40-613) was a gift from Dr. Benfang Lei (Montana State University). Pokeweed mitogen was a gift from Dr. Shane Crotty (La Jolla Institute for Allergy & Immunology).
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2

Murine Neuroinflammation Immunostaining Protocol

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We obtained murine recombinant IL-33 (580506), AF647-conjugated Aβ (clone: 6E10) antibody (803021), APC-conjugated MHC-II (clone: M5/114.15.2) antibody (107614), FITC-conjugated VCAM1 (clone: MVCAM.A) antibody (105706) and MHC-II (I-A/I-E) (clone: M5/114.15.2) antibody (107601) from BioLegend. We obtained ICAM1-neutralizing (clone: YN1/1.7.4) antibody (BE0020)75 (link),76 (link) and VCAM1-neutralizing (clone: M/K-2.7) antibody (BE0027)69 (link),77 (link) from Bio X Cell. We obtained AF488-conjugated CD11b (clone: M1/70) antibody (53-0112-82), APC-conjugated CD11b (clone: M1/70) antibody (17-0112-83) and biotinylated CD11b (clone: M1/70) antibody (13-0112-82) from eBioscience. ApoE-neutralizing (clone: HJ6.3) antibody was a gift from D. Holtzman36 (link). We obtained DAPI (D3571) from Life Technologies, and mouse ITGB2 recombinant protein (LS-G14036-10) was from LSBio. We obtained mouse ApoE recombinant protein (MBS955382) from MyBioSource as well as CCR7 neutralizing (clone: 4B12) antibody (MAB3477)78 (link) and VCAM1 antibody (BBA5) from R&D Systems. We obtained recombinant mouse CD44 protein (53953-M08H) from Sino Biological, MeX04 (4920) from Tocris Bioscience and Iba1 antibody (019-19741) from Wako.
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3

Interferon Signaling and Immune Cell Analysis

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Reagents were obtained from: Doxycycline, ClonTech (#8634-1); Jak Inhibitor I (#420099) and PS-1145 (P6624), Sigma. IFN α and β were from PBL Assay Science (#11410-2 and #11200-1), and IFNγ from PeproTech (#300-02). Lipofectamine 2000 was from Life Technologies. Flow antibodies/reagents were from Biolegend: Zombie UV (#423107), HA (#901526), IFNAR1 (#21370-3), CD11b (#101208), MHCII (I-A/I-E) (#107620), CD86 (#105036), CD11c (#117318), CD45 (#103116 or #103128), F4/80 (#123116), Ly6c (#128033), Ly6g (#127622), mouse Fc Trustain block (#101319), NK1.1 (#108724), anti-mouse CD69 (#104514) and CD25 (#102036). IFNGR (10338-MM05-A) was from Sino Biologic.
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4

Fluorescent Antibody-Based Immune Profiling

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Fluorescent-conjugated antibodies including anti-mouse CD11c, CD11b,
B220, SiglecH, mPDCA1, and MHCII (I-A/I-E) were purchased from Biolegend (San
Diego, CA). PE-conjugated anti-mouse Ly49Q was purchased from MBL International
(Woburn, MA). LIVE/DEAD fixable near-IR dead cell staining kit was purchased
from Life Technologies (Grand Island, NY).
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5

Comprehensive Immune Cell Phenotyping

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Fluorescent conjugated antibodies including anti-mouse CD11c, CD11b, B220, SiglecH, mPDCA1, PDC-TREM, MHC II (I-A/I-E), and CD40 were purchased from Biolegend (San Diego, CA). PE-conjugated anti-mouse Ly49Q was purchased from MBL International (Woburn, MA). LIVE/DEAD fixable near-IR dead cell staining kit was purchased from Life Technologies (Grand Island, NY). Mouse CpG DNA was purchased from Hycult Biotech (Canton, MA).
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6

Multiparameter Flow Cytometry for Immune Cell Profiling

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For fluorescent staining, single cell suspensions were blocked with 5% rat serum for 5 min. Fluorochrome-conjugated monoclonal antibodies were used: CD103 (2E7), CD115 (AFS98), CD11b (M1/70), CD11c (N418), CD4 (RM4-5), CD45 (30-F11), CD45.1 (A20), CD45.2 (104), CD64 (X54-5/7.1), F4/80 (BM8), Ly6C (HK1.4), Ly6G (1A8), MHCII I-A/I-E (M5/114.15.2), TCRβ (H57-597), TCR Vα2 (B20.1), Tim4 (RMT4-54) (all from Biolegend), TCR Vβ5.1 (MR9-4, BD), SiglecF (E50-2440, BD). Cell viability was established with 7AAD (Biolegend) or Fixable Viability Dye eFluor™ 780 (eBioscience). For intracellular staining, the Foxp3/Transcription Factor Staining Buffer Set (eBioscience) was used according to manufacturer’s instructions. FoxP3 (FJK-16 s, eBioscience) and Ki67 (SolA15, eBioscience) were used for intracellular staining. Flow cytometry was performed using a LSRFortessa (BD) and analysed with FlowJo software (FlowJo). Cell sorting was performed using a FACSAriaII (BD).
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