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Agarose

Manufactured by Bio Basic
Sourced in Canada

Agarose is a polysaccharide derived from seaweed, commonly used as a gel matrix in various laboratory applications. It is a neutral, hydrophilic, and porous material that forms a stable gel when dissolved in water and allowed to cool. Agarose is widely utilized in gel electrophoresis techniques to separate and analyze biomolecules such as DNA, RNA, and proteins based on their size and charge.

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7 protocols using agarose

1

Bacterial Protein Expression and Purification

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Media for bacterial culture Luria broth and Luria agar were purchased from Himedia. Agarose was purchased from Biobasic (Ontario, Canada). Restriction enzymes (NdeI and XhoI), PCR-Taq DNA polymerase, phusion polymerase and cloning-quick DNA ligase were purchased from Thermo Scientific (USA). Ampicillin, kanamycin, monoclonal anti-His antibody and DNA preparation kits were purchased from Sigma (St. Louis, MO). Ni-NTA column and gel filtration column Superdex-75 were purchased from GE healthcare (GE Healthcare Life Sciences, Uppsala, Sweden). All reagents for the buffer preparation are of analytical grade.
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2

Bacterial Genomic DNA Extraction

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The majority of bacteriological media utilized in this study were procured from Oxoid Co., Thermo Fisher Scientific, Basingstoke, UK, unless otherwise specified. Proteinase K and Dream Taq Green Master Mix 2X were obtained from Thermo Scientific Co., Waltham, MA, USA. Solvents were sourced from Sigma Co., Saint Louis, MO, USA. Lysozyme and agarose were acquired from Bio Basic Inc., Markham, ON, Canada. The DNA ladder (100 bp DNA Ladder H3 RTU—Ready-to-Use) was purchased from GeneDirex, Inc., Taoyuan, Taiwan. Universal primers specific for the 16S rDNA gene were synthesized by Bioneer Co., Daejeon, Republic of Korea.
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3

Fabrication of Antioxidant Composite Hydrogels

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Agarose (MW: 120 kDa) was purchased from Bio Basic Inc., Canada. Gelatin (from porcine skin), zinc nitrate hexahydrate (Zn(NO3)2 · 6H2O), aluminum nitrate nonahydrate (Al(NO3)3 · 9H2O), sodium bicarbonate (NaHCO3), tris(hydroxymethyl)aminomethane (Tris: NH2C(CH2OH)3), and the antioxidant agent (ferulic acid (C10H10O4)) were purchased from Sigma-Aldrich Co. LLC, USA. Ammonia water (NH4OH), sodium hydroxide (NaOH), and hydrochloric acid (HCl) were purchased from Daejung Chemicals & Metals Co. LTD., Korea.
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4

Synthesis and Characterization of Silver Nanoparticles

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Colistin sulfate and sodium borohydride (NaBH4) were purchased from Sigma Aldrich, Inc., St. Louis, MO, USA. Sodium dodecyl sulfate (SDS), sodium sulfate, sodium phosphate dibasic, and sodium dihydrogen orthophosphate were procured from LOBA Chemie PVT. LTD., Mumbai, India. Silver nitrate (AgNO3), hydrochloric acid (HCl), potassium bromide (KBr), sodium chloride (NaCl), sodium hydroxide (NaOH), dimethyl sulfoxide (DMSO), and acetonitrile (ACN) were analytical grade and procured from RCI Labscan Limited, Bangkok, Thailand. Mueller Hinton (MH) and Luria Bertani (LB) agar and broth were obtained from Titan Biotech Ltd., Delhi, India. Agarose and EDTA were purchased from Bio Basic Canada Inc., Markham, Ontario, Canada. Quick-Loaded® DNA ladder was from New England BioLabs Inc., Herts, England. Safe-Green dye was purchased from Applied Biological Materials Inc., Richmond, BC, Canada. E.Z.N.A.® bacterial DNA kit was obtained from Omega Bio-tek Inc., Norcross, GA, USA. E. coli TISTR 887, P. aeruginosa TISTR 357, and K. pneumonia TISTR 1383 were from the Thailand Institute of Scientific and Technology Research, Pathum Thani, Thailand.
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5

Bacterial DNA Extraction Protocol

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Majority of bacteriological media used in this study were purchased from Oxoid Co., UK, unless otherwise stated. Proteinase K and Dream Taq Green Master Mix 2X were purchased from Thermo Scientific Co., USA. Isopropanol, acetone, acetonitrile, toluene, methyl alcohol, and ethyl alcohol were purchased from Sigma, Co., USA. Lysozyme and agarose were purchased from Bio Basic Inc., Canada. DNA ladder (100 bp DNA Ladder H3 RTU (Ready-to-Use) was purchased from GeneDirex, Inc., Taiwan. Universal primers specific for 16S rDNA gene were synthesized by Bioneer Co., Korea.
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6

PLGA-Based Nanoparticles for Temozolomide Delivery

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Agarose was purchased from Bio Basic Inc. (Markham, ON, Canada). Dulbecco’s Modified Eagle Medium (DMEM), fetal bovine serum (FBS), Dulbecco’s phosphate-buffered saline (DPBS), and penicillin/streptomycin (pen/strep) were purchased from Gibco (Grand Island, NY, USA). A 6-well plate was obtained from Corning (Corning, NY, USA). Poly (d, l-lactide-co-glycolide) (PLGA), Temozolomide (TMZ), Deferiprone (DFP), Span 80®, and sodium alginate were purchased from Sigma (St. Louis, MO, USA). liquid paraffin was obtained from Caledon Laboratories (Georgetown, ON, Canada)).
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7

Heavy Metal Tolerance Assay

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Davis minimal medium (DMM), 4-aminoantipyrine, potassium ferrocyanide, catechol, sodium hydroxide pellets used in this study were purchased from HiMedia Laboratories Pvt. Ltd. Mumbai, phenol, 2-mercaptoethanol, ammonium hydroxide, glycerol, disodium EDTA, primers, acids and solvents were procured from Sigma, Aldrich, Tris Base, Agarose from Bio Basic Inc. All the following heavy metals CoCl2.2H2O, ZnSO4.H2O, (CH3COO)2Pb.3H2O, HgCl2, CdCl2, CuSO4.5H2O, NiCl2.6H2O, MnCl2.4H2O, and K2Cr2O7 were purchased from Merck Millipore, Taq DNA polymerase Master Mix from Ampliqon and PCR purification Kit from Favorgen Biotech Corp. were used.
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