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9 protocols using recombinant baff

1

Apoptosis in CLL Cells: BAFF/APRIL Effects

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PB mononuclear cells from six patients with CLL, exhibiting high (>40%, 3 patients) or very low to absent (<10%, 3 patients) TACI expression, were isolated by density gradient centrifugation and diluted with Iscove's Modified Dulbecco's Medium (IMDM, Life Technologies) supplemented with 10% fetal bovine serum (FBS), at a concentration of 8 × 105 cells/mL. Afterwards, aliquots of 0.5 mL of cells were plated on a 96-well plate and stimulated by either 1 μg/mL of recombinant BAFF (R&D Systems, Mineapolis, USA), or 200 ng/mL APRIL (R&D Systems), or combinations of the above, diluted into 0.1 mL IMDM. Another aliquot of 0.5 mL of cells supplemented with 0.1 mL IMDM without any stimulus was used as internal control. Samples were then incubated at 37°C in the presence of 10% CO2 for 24 h. Subsequently, apoptosis was measured by flow cytometry using an Annexin V-FITC/7-AAD (7-AAD) kit (BC), according to the manufacturer's instructions.
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2

Murine Model of Preterm Birth

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On day 16 gestation, gravid female mice were challenged
intraperitoneally (i.p.) with ultrapure LPS (Invivogen) at the indicated
concentrations. Where indicated, anti-BAFF and anti-APRIL (Adipogen; 2
µg/g) and recombinant BAFF and recombinant APRIL (R&D Systems; 2
µg/mouse) were administered i.p. Doses were selected based on
previous evidence of a biological effect at the indicated
concentration.22 (link)PTB was defined as parturition within 24 h after LPS challenge (all pups
deceased). Term birth was defined as parturition between days 19–21
(all pups alive).9 (link),41 (link)
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3

Evaluating BAFF-Induced B Cell Apoptosis

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Purified B cells were cultured either in medium alone or in the presence of 1.56-25ng ml of recombinant BAFF (R&D Systems) for the indicated time and stained with Annexin V (Roche) and 7-aminoactinomycin D (7-AAD; Sigma-Aldrich).
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4

Immature and MF B Cell Culture

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Sorted bone marrow immature/T1 B cells and splenic MF B cells (2.5 × 104 cells/well) were cultured in IMDM (Invitrogen) containing 10% HyClone FBS (Thermo scientific), 2-mercaptoethanol (5.5 × 10−5 M), penicillin (100 units/ml), streptomycin (100 µg/ml; all Invitrogen) and recombinant BAFF (250 ng/ml; R & D systems), in the presence or absence of F(ab’)2 fragment of anti-IgM (anti-µ) Ab (10 µg/ml; Jackson Immunoresearch), CpG (ODN1826, 0.5 and 5 µg/ml; InvivoGen), LPS (0127:B8, 0.5 and 5 µg/ml; Sigma) or combinations of these stimuli. In some cultures, we also added n-butanol (0.1, 0.3, and 1.0%; Sigma) or chloroquine (0.4 and 2.0 µg/ml; Sigma). Twenty-four hours after culture, B cells were harvested in TRIzol-LS reagent for AID mRNA quantification.
Single immature/T1 B cells and MF B cells were expanded in the presence of NB-21.2D9 feeder cells (Nojima cultures) (Kuraoka et al., 2016 (link)). These procedures are detailed in SI Supplemental Experimental Procedures.
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5

Investigating B cell activation and differentiation

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Single cell suspensions were prepared from the spleens of 8 week old C57BL/6-IghB1-8/B1-8 mice after red blood cell lysis and B cells purified using negative selection with anti-CD43 magnetic microbeads and an autoMACS (Miltenyi Biotec). B cell purity as determined by flow cytometric analysis was at all times >95%. B cells were resuspended at 2 × 106 cells per ml and stimulated with 10 ng/ml of NP28-Ficoll (Biosearch Technologies) in the presence of 10 ng/ml recombinant BAFF (R&D Systems) to promote B cell survival and with or without 20 μM LPA or 50 μM sterile-filtered OTP. After 24 hours, cells were collected, stained, and analyzed for the expression of Igλ, CD86 and CD69 by flow cytometry.
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6

BM-Derived Pre-B Cell Assay with BAFF

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Bone marrow (BM) cells from OVA sensitized and exposed mice were harvested and introduced in a mouse Pre-B Colony Forming Cell (CFC) assay using methylcellulose complete media for Pre-B Cells (HSC009; R&D Systems, Minneapolis, USA), according to the manufacturer’s instructions. The assay is based on the ability of hematopoietic progenitors to proliferate and differentiate into colonies in a semi-solid media in response to cytokine stimulation. Cells were cultured in the presence of complete media (containing IL-7) for 3 days. At day 4 recombinant BAFF (50 ng/ml, R&D Systems), BAFF-R-Ig fusion protein blocking BAFFR (100 ng/ml, R&D Systems) or its control protein was added to the cells. Colony Forming Units (CFUs) were counted at day 7.
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7

In vitro Splenic B Cell Proliferation Assay

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Splenic B cells were isolated with MACS beads by negative selection according to the manufacturer’s protocol (STEMCELL Technologies). The purity was routinely >96% as assessed by staining with anti-B220. For the in vitro proliferation assay, splenic B cells were labeled with 1 mM CFSE (Sigma-Aldrich) for 10 min in phosphate-buffered saline (PBS) and washed twice with RPMI 1640 medium containing 10% fetal bovine serum (FBS) before plating. B cells at a density of 1 × 106 cells/ml were then cultured in normal culture medium and stimulated with F(ab’)2 goat anti-mouse IgM (10 µg/ml; Jackson ImmunoResearch), LPS from Escherichia coli O111:B4 (2 µg/ml; Sigma-Aldrich), recombinant BAFF (100 ng/ml; R&D Systems) and anti-CD40 (1 µg/ml; BD Biosciences). Normal culture medium for B cells was 1640 medium with 10% (vol/vol) FBS, 0.05 mM β-mercaptoethanol, 1 mM sodium pyruvate, 100 U/ml penicillin and 100 µg/ml streptomycin. CFSE dilution was analyzed by flow cytometry after 72 h of stimulation. In some experiments, 20 μM DFO or 100 μM FAC was applied to the cell culture medium. For the [3H]thymidine incorporation assay, purified B cells were also plated at a density of 2 × 105 cells per well (200 µl in 96-well plates) with various levels of stimulation and cultured for 72 h with the addition of 0.4 mCi [3H]thymidine for the final 12 h of culture.
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8

Isolating and Characterizing Splenic B Cells in MRL/Lpr Mice

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Splenic B cells were isolated from 10- to 12-week-old MRL/Lpr mice using B Cell Isolation Kit (Miltenyi Biotec). Isolated cells were washed three times with PBS, after which their purity was assessed by flow cytometry (purity was greater than 97%). For B-cell stimulation and survival, 1 × 106 B cells were cultured in RPMI media containing 2 to 10% fetal bovine serum or 10% of anti-CD138 beads pretreated or IgG-coated beads pretreated MRL/Lpr mice serum. Next, cells were stimulated with 500 ng/ml of recombinant APRIL (Peprotech) or recombinant BAFF (R&D Systems) with or without recombinant mouse CD138 (R&D Systems) for 24 or 120 h. Phosphorylation of ERK was assessed in Western blot analysis, and the survival of cells was analyzed by FACS after DAPI staining. For B-cell differentiation analysis, B cells were first cultured in RPMI media containing 10% anti-CD138 beads pretreated MRL/Lpr mice serum with, and then were incubated with 250 ng/ml of APRIL and 10 ng/ml of LPS for 5 days. Stimulated cells were harvested, and percentages of plasma cells were assayed on DAPI-negative cells with FACS after staining with B220, CD138, and CXCR4 antibodies. Culture supernatants were also collected, and total or anti-dsDNA–specific IgM, IgG, and IgA antibody concentrations were determined in ELISA as described previously (26 (link)).
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9

3T3-L1 Adipocyte Differentiation Assay

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3T3-L1 preadipocytes purchased from the American Type Culture Collection (Manassas, VA, USA) were cultured in Dulbecco's modified Eagles' medium (DMEM) (Hyclone, Logan, UT, USA) containing 10% bovine calf serum (Hyclone) at 37 °C in a humidified atmosphere of 5% CO2. After 2 or 3 days, cells were subcultured into 35-mm plates at a concentration of 3 × 104 cells per plate. At 2 days postconfluence (designated as day 0), cell differentiation was induced with a mixture of IBMX (methylisobutylxanthine, 50 mM; Sigma-Aldrich, St Louis, MO, USA), dexamethasone (1 mM; Sigma-Aldrich) and insulin (1 mg ml−1; Sigma-Aldrich) in DMEM containing 10% fetal bovine serum (Hyclone). At days 2 and 4, the medium was replaced with DMEM containing 10% fetal bovine serum and insulin (1 mg ml−1). At day 6, the medium was replaced with DMEM containing 10% fetal bovine serum only. At day 8, cells were treated with recombinant BAFF (10 ng ml−1) and BAFF-R antibody (200 ng ml−1) (R&D Systems, Minneapolis, MN, USA) for 24 h. Cells and the conditioned medium were collected for RNA extraction and enzyme-linked immunosorbent assay, respectively.
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