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9 protocols using cryostat machine

1

Characterization of MICAL2 in Skeletal Muscle and Heart

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All animal procedures were performed at the Translational Cardiomyology laboratory according to the guidelines of the Animal Welfare Committee of KU Leuven (Ethical Committee approval number P161/2018.) and Belgian/European legislation. Mice were sacrificed by cervical dislocation, skeletal muscles and hearts were snap frozen in liquid nitrogen-cooled isopentane and kept at −80 °C for further analyses. The samples were cut transversally in 7 µm sections using a cryostat machine (Leica, Wetzlar, Germany). Immunofluorescence analyses were performed to characterize MICAL2 in skeletal muscle of different murine models and to check MICAL2 protein in AAV-Mical2 H11Cas9 and in AAV-SHAM H11Cas9 overtime, not only in skeletal muscle, but also in hearts. Moreover, cryosections were also used for Hematoxylin & Eosin staining and Picro-Sirius red staining on AAV-Mical2 H11Cas9 and in AAV-SHAM H11Cas9 skeletal and cardiac muscles.
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2

Cryo-sectioning and smFISH of Transgenic Pituitary

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C57BL6/Cx3cr1-GFP transgenic mice were sacrificed by decapitation. The whole pituitary was quickly dissected and fixed in 1% PFA containing 30% sucrose overnight at 4 0C. The fixed tissue was then washed and equilibrated in half Tissue-Tek O.C.T Compound (Sakura) and half 60% sucrose (final 30%) mixture before positioned inside a plastic mold with only O.C.T compound and frozen by burying in dry ice powder. After the whole block turned opaque, it was stored at –80°C in a sealed plastic bag in the dark. Before cryotomy, the embedded O.C.T block was first equilibrated inside the Cryostat machine (Leica) to –25°C for 30 min followed by cryo-sectioning (7 µm) and slice collection on 22 × 22-mm glass coverslips #1 (Thermo Scientific Menzel), precoated with 0.01% L-lysine (Sigma), and stored at –80°C in a Parafilm sealed six-well plate in the dark for up to a month before further digestion and prehybridization steps. smFISH was conducted as described in (Ji and van Oudenaarden, 2012 (link)) with the exception that the formamide concentration was increased to 30% for prehybridization and washing. Tissue sections were mounted on Prolong Gold antifade mountant (Thermo Fisher) and images were captured using a wide-field fluorescent microscope (Nikon Eclipse Ti-E) with a cooled CCD camera equipped with oil immersion 60× objective.
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3

Intramuscular Delivery of Human MABs in Mice

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Intramuscular injections of 2.5 × 105 human MABs were performed in the TA of 3‐month‐old Sgcb‐null Rag2‐null γc‐null mice, available at KU Leuven SPF animal care facility, Belgium (= 6). MABs from three different donors at P1‐P2 were used. Uninjected limbs were used as controls. After 21 days, mice were sacrificed and muscles were snap‐frozen in liquid nitrogen‐cooled isopentane and then stored at −80°C for further analysis. The samples were then cut transversally in 7‐μm sections using a cryostat machine (Leica, Wetzlar, Germany). Immunofluorescence analyses were performed to study the tissue. Mouse procedures were performed according to the guidelines of the Institutional Animal Care and Use of KU Leuven, under the approved project with protocol code ECD N°P095/2012 issued by the Ethische Commissie Dierproeven of the KU Leuven.
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4

Immunohistochemical Analysis of Mouse Brain

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At the termination of the experiments, mice were anesthetized with ketamine/xylazine (90 and 10 mg/kg), and perfused with cold 5 mL PBS and 30 mL of 4% paraformaldehyde via an intra-cardial injection. Mouse brains were collected, post-fixed in 4% paraformaldehyde for 2 days at 4°C, and then infiltrated with 30% sucrose for 5 days at 4°C before embedding in OCT medium. Tissue was serially sectioned at a thickness of 30 μm using a Leica cryostat machine. Detection of induced YPF was enhanced by immunohistochemical staining with chicken anti-GFP antibodies (Aves Labs, Tigard, OR, catalog no. GFP-1020). In addition, sections were incubated with antibodies against GFAP (Thermo Fisher Scientific, Waltham, MA, catalog no. PA110019), DCX (Abcam, San Francisco, CA, catalog no. ab18723), or NeuN (Thermo Fisher Scientific, catalog no. MAB377). Following primary antibody incubation at 4°C overnight, sections were incubated with Alexa Fluor secondary antibodies (goat-anti-chicken 488, catalog no. A11039; and goat-anti-rabbit 568, catalog no. A11011).
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5

Immunofluorescent Labeling of Mouse Retina

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Mouse eyeballs were fixed with 4% PFA-PBS up to 4 hours, and vertical eyeball sections were prepared at 12 μm thickness using a cryostat machine (Leica), and then stored at −80 °C until use. In fluorescent staining, the retina sections were the first permeabilized and blocked for 15 min with 1% bovine serum albumin (BSA) and 0.2% Triton X-100 in PBS. Primary and secondary antibodies were each applied for 1 hour and 30 min, each at room temperature (RT), in a 1:1,000 dilution. The following antibodies were used: mouse monoclonal anti-RPE65 (Life Technologies, catalog number: MA1–116578) and relevant secondary antibodies conjugated with Alexa Fluor 488 (Life Technologies). Nuclei were counterstained with Hoechst 33342 (Life Technologies, catalog number: H3570).
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6

Iba-1 Immunohistochemistry of Brain Slices

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Iba-1 DAB immunohistochemical analysis was performed on 35 μm brain slices obtained using a Leica cryostat machine. Endogenous peroxidases were deactivated with 3 % hydrogen peroxide in 0.1 M PB for 15 min. Sections were washed twice in 0.1 M PB then blocked in normal serum goat 5%, BSA 1%, Tween 0,1% in 0.1 M PB. Sections were incubated with primary antibody rabbit anti-Iba1 (1:500, Wako, cat no. 019–19741) in blocking buffer o/n at 4°C. After overnight incubation, sections were washed three times with 0.5 % BSA in 0.1 M PB and incubated with secondary antibody (biotinylated goat-anti rabbit, 1:400, Vector labs, cat no. BA-1000) in 0.5 % BSA in 0.1 M PB for 1 h at room temperature. Sections were washed twice in 0.5 % BSA in 0.1 M PB and incubated with ABC elite vectastatin (Vector labs, cat no. PK-6100) for 1 h and then washed twice with 0.1 M PB. Sections were stained with Impact DAB (Vector labs, cat no. SK-4105) for 5 min. Sections were transferred to excess 0.1 M PB after immunoreactivity and mounted in VectaMount.
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7

Immunofluorescent Labeling of Mouse Retina

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Mouse eyeballs were fixed with 4% PFA-PBS up to 4 hours, and vertical eyeball sections were prepared at 12 μm thickness using a cryostat machine (Leica), and then stored at −80 °C until use. In fluorescent staining, the retina sections were the first permeabilized and blocked for 15 min with 1% bovine serum albumin (BSA) and 0.2% Triton X-100 in PBS. Primary and secondary antibodies were each applied for 1 hour and 30 min, each at room temperature (RT), in a 1:1,000 dilution. The following antibodies were used: mouse monoclonal anti-RPE65 (Life Technologies, catalog number: MA1–116578) and relevant secondary antibodies conjugated with Alexa Fluor 488 (Life Technologies). Nuclei were counterstained with Hoechst 33342 (Life Technologies, catalog number: H3570).
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8

Isolation of Rat Nucleus Accumbens

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Animal brains were collected on day 16, immediately frozen, and stored at −80°C. The NAc was collected as pooled tissue containing NAc (core and shell) and isolated using a cryostat machine (Leica Biosystems). The NAc region (1.2–3.7 mm from bregma) was identified using the Brain Rat Atlas (Paxinos and Watson, 2006 ) and as performed previously in Alshehri et al. (2018 (link)) and Hammad et al. (2017 (link)).
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9

Immunohistochemical Analysis of Retinal Vasculature

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Eyes preserved in 4% PFA with 30% sucrose were first embedded in OCT compounds on dry ice. Then the retinal cross-sections (10 mm thick) were cut using a cryostat machine (Leica Biosystems) and stored at − 80 °C until use. For immunostaining, retinal cross-sections were incubated in blocking buffer (Dako #X0909) for 1 h at RT, followed by incubation with primary antibodies of rabbit anti-mouse CD31 (1:100; Abcam) and mouse anti-human 11A50-B10 (1:200, Biolegend). Sections were then washed three times in PBS and incubated with secondary antibodies (see Table 1 for details) for 2 h at RT. The sections were then briefly washed twice in PBS for 5 min, then incubated in thioflavin-S (1%, Sigma-Aldrich) for 10 min at RT. Finally, sections were washed with 70% ethanol three times followed by PBS, and then mounted using ProLong Glass antifade reagent (Invitrogen #P36980). Images were obtained using an Axio Imager Z1 fluorescence microscope (Carl Zeiss MicroImaging, Inc.) equipped with ApoTome, AxioCam MRm, and AxioCam HRc cameras. Routine controls included staining of non-Tg mouse retina and ADtg mouse sections that were processed using identical protocols while omitting the primary antibody to assess nonspecific labeling.
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