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8 protocols using 13 hode

1

Adipogenic Differentiation of C-MSCs

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The medium used to prompt the adipogenic differentiation of C‐MSC consists of IMDM supplemented with 10% FBS (Euroclone, Milan, Italy), 0.5 mmol/l 3‐isobutyl‐1‐methylxanthine (Sigma‐Aldrich, St. Louis, Missouri, USA), 1 µmol/l hydrocortisone (Sigma‐Aldrich, St. Louis, Missouri, USA), 0.1 mmol/l indomethacin (Sigma‐Aldrich, St. Louis, Missouri, USA), 10,000 U/ml penicillin (Invitrogen, Carlsbad, California, USA), 10,000 µg/ml streptomycin (Invitrogen, Carlsbad, California, USA), and 20 mmol/l L‐Glutamine (Sigma‐Aldrich, St. Louis, Missouri, USA). For the preparation of AM, refer to (Pilato et al, 2018 ).
C‐MSC were plated in AM at a concentration of 20,000 cells/cm2 and treated with 150 μg/ml oxLDL (see the paragraph “oxLDL preparation”) (Asmis & Begley, 2003 ; Hamel et al, 2008 (link); Lee et al, 2010 (link)), 20 μg/ml 13HODE (Cayman Chemicals, Ann Arbor, Michigan, USA) (Nagy et al, 1998 (link); Kim et al, 2013 (link)), or 5 mmol/l NAC (Sigma‐Aldrich, St. Louis, Missouri, USA) (Zolkipli et al, 2011 (link); Wang et al, 2015 (link); Mao et al, 2016 (link); Pieralisi et al, 2016 (link)), a known thiolic antioxidant (Sunitha et al, 2013 (link)). After 72 h, treatment effects were evaluated by ORO (Sigma‐Aldrich, St. Louis, Missouri, USA) staining and Western blotting analysis.
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2

Oxylipin Cytotoxicity in Glioma Cells

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Cells were seeded at 3 × 103 for U251-MG and U87-MG and at 5 × 103 for A172 in 96-well plates. After 24 h, cells were treated with 0.1 µM, 0.5 µM, and 1 µM of the following (S)-form oxylipins: 13-HODE, 9-HODE, 15-HETE, 5-HETE, 12-HETE, 8-HETE, 9-HETE, 20-HETE (all Cayman Chemical, USA) and 100% ethanol (control). At 24, 48, and 72 h of treatment, each well was incubated for 4 h with 0.25 mg/mL of tetrazolium at 37 °C in a humidified atmosphere with 5% CO2. At the end of incubation, cells were washed with warm PBS and lysed with 100 µL of 0.04-M HCl in isopropanol to solubilize the formazan. The absorbance was read at 590 nm in an Epoch microplate reader (BIOTEK, Weinusky, VT, USA).
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3

Measurement of Oxylipins and Endocannabinoids

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Ovine COX‐1 (cat. no. 60100), human recombinant COX‐2 (cat. no. 60122), COX‐2 polyclonal antibody (rabbit anti‐mouse, cat #: 160106), URB597 (3′‐carbamoyl‐biphenyl‐ 3‐yl‐cyclohexyl‐carbamate), arachidonic acid (AA), AEA, PEA, stearoylethanolamide (SEA), oleoylethanolamide (OEA), 2‐arachidonoylglycerol (2‐AG), PEA‐d4, SEA‐d3, PGD2, PGE2, 11‐HETE, 15‐HETE, 9‐HODE, 13‐HODE, butylhydroxytoluene (BHT), 12‐[[(cyclohexylamino)carbonyl]amino]‐dodecanoic acid (CUDA), 9‐HODE‐d4, PGE2‐d4 and PGD2‐d4 were purchased from the Cayman Chemical Co. (Ann Arbor, MI, USA). PEA is described by the manufacturers as ≥98% pure. We detected a ~1.8 and ~0.9% impurity of the PEA by SEA and OEA, respectively, in our stock solutions (Fig. S1). The abbreviations for the oxylipins investigated in this study are given in Table 1. LPS from E. coli, flurbiprofen, palmitic acid and pentadecylamine were obtained from Sigma‐Aldrich (St. Louis, MO). Recombinant mouse IFNγ and protease inhibitor cocktail set III were obtained from Merck Millipore (Darmstadt, Germany). [Ethanolamine 1‐3H]PEA (specific activity 20 Ci/mmol) was obtained from American Radiolabeled Chemicals Inc (St. Louis, MO.).
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Quantification of Lipid Mediators

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Prostaglandin F2-alpha (PGF2-α); 6-keto-prostaglandin F1-alpha (6-keto-PGF1-α); PGA1, PGB2, PGD2, PGE2, 8-isoPGF2-α, 15-deoxy-PGJ2; thromboxane B2 (TXB2); leukotriene B4 (LTB4); leukotriene E4 (LTE4); 5-hydroxyeicosateraenoic acid (5-HETE); 5,6-dihydroxyeicosatrienoic acid (5,6-DHET); 12-HETE; 8-HETE; 9-HETE; 5-oxoeicosatetraenoic acid (5-OxoETE); 15-HETE; 16-HETE; 20-HETE; 11,12-DHET, 14,15-DHET; 8,9-epoxy-5Z,8Z,11Z-eicosatrienoic acid (8,9-EET); 11,12-EET; 14,15-EET; 5-hydroxyeicosapentaenoic acid (5-HEPE); 15-HEPE; 9,10-dihydroxy-9Z-octadecenoic acid (9,10-DiHOME); 12,13-DiHOME; 9,10-epoxyoctadecenoic acid (9,10-EpOME); 12,13-EpOME; 9-hdroxyoctadecadienoic acid (9-HODE); 13-HODE; 1-cyclohexyl-dodecanoic acid urea (CUDA); arachidonic acid (ARA); PGF2-α-d4; TXB2-d4; 12,13-EpOME-d4; AA-d8; 9-HODE-d4; and linoleic acid (LA), were obtained from Cayman Chemical (Waterloo, Australia). Formic acid, hexane, acetonitrile and methanol of high-performance liquid chromatography (HPLC) grade were purchased from Sigma Co. (Santa Cruz, CA, USA).
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5

Hepa-1c1c7 Cell Treatment Protocols

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Hepa-1c1c7 cells (ATCC, Rockville, MD, USA) were cultured in Alpha minimum essential medium without nucleosides (Life technologies, Grand Island, NY, USA) containing 10% fetal bovine serum (Atlanta Biologicals, Lawrenceville, GA), 100 U/mL penicillin and 100 μg/mL streptomycin (Invitrogen, Carlsbad, CA), at 37 °C in a humidified atmosphere of 5% CO2. 13-HODE (Cayman, Ann Arbor, MI) was used to treat Hepa-1c1c7 cells at 1 μM in the presence or absence of the antioxidant, N-acetyl-L-cysteine (NAC), at 10 mM for 3 days. Linoleic acid, ethanol, or acetaldehyde was also used to treat Hepa-1c1c7 cells at 200 μM, 100 mM, or 100 μM, respectively, for 3 days. Cells were washed twice with cold PBS and collected.
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6

Evaluating Bioactive Lipid Signaling in Neurite Outgrowth

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LA (NuChek, Elysian, MN, USA), 13-HODE (Cayman Chemical, Ann Arbor, MI, USA), or PGE2 (Cayman Chemical) were first dissolved as 1000X stocks in absolute ethanol and then diluted at 1:1000 directly into cultures. Cultures were incubated for 48 h in the presence of varying final concentrations of LA, 13-HODE, or PGE-2 at 1, 10, 50, 100, 500 and 1000 nM; control cultures were treated with vehicle (ethanol; 1:1000 dilution). Rho-kinase inhibitor Y-27632 (Sigma-Aldrich) was used as a positive control for axon outgrowth (Krug et al. 2013 (link), Stiegler et al. 2011 (link)). UHPLC-MS/MS analysis confirmed the purity of the 13-HODE and PGE2 stock solutions as indicated in representative Supplementary Figure 1A and B. GC-FID analysis confirmed purity of LA following transesterification with 1.2% HCl in methanol as described above (Supplementary Figure 1C).
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Chemicals and Reagents for Analytical Protocols

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The chemicals were obtained from the following sources: arachidonic acid, linoleic acid, alpha‐linolenic acid, gamma‐linolenic acid, eicosapentaenoic acid, and docosahexaenoic acid from Sigma (Taufkirchen, Germany); HPLC standards of 12(±)HETE, 12S‐HETE, 15(±)‐HETE, 15S‐HETE, 13S‐HODE, 13(±)‐HODE from Cayman Chem. (distributed by Biomol, Hamburg, Germany); sodium borohydride from Life Technologies, Inc. (Eggenstein, Germany); HPLC solvents from Baker (Deventer, The Netherlands); antibiotics and isopropyl‐β‐thiogalactopyranoside (IPTG) from Carl Roth GmbH (Karlsruhe, Germany); restriction enzymes from Thermo Fisher Scientific‐Fermentas (Schwerte, Germany); and the E. coli strain (Rosetta(DE3) pLysS) from Invitrogen (Carlsbad, USA). Oligonucleotide synthesis was performed at BioTez (Berlin, Germany). Nucleic acid sequencing was carried out at Eurofins MWG Operon (Ebersberg, Germany).
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8

Cartilage Explant Culture and Stimulation

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Femoral heads from 3-to 4-week-old WT mice were placed in 24-well plates (6 femoral heads (3 mice) per well) at 37 C in 500 ml of DMEM containing antibiotics and 10% fetal calf serum for 48 h before stimulation with interleukin-1a (IL-1a) in the absence or presence of the 12/15-LOX products 15-HETE, 13-HODE and LXA4 (Cayman Chemical). A detailed description of isolation of culture of cartilage explants can be found in the Supplementary Methods.
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