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6 protocols using anti phospho ampkα thr172 40h9

1

Western Blot Antibody Reagents

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Anti-insulin receptor subunit β (IRβ) and anti-CD36 antibodies for immunoblotting were purchased from Santa Cruz Biotechnology (Dallas, TX, USA). The anti-IRS2 (clone 9.5.2) antibody for immunoblotting was purchased from Merck Millipore (Billerica, MA, USA). Anti-phospho-p70 S6K (Thr389), anti-p70 S6K (49D7), anti-phospho-4E-BP1 (Thr37/46), anti-4E-BP1, and anti-phospho-AMPKα (Thr172) (40H9) antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA). The anti-GAPDH (6C5) antibody was purchased from Abcam (Cambridge, UK). Anti-rabbit and mouse IgG horseradish peroxidase-conjugated secondary antibodies were purchased from GE Healthcare (Little Chalfont, UK).
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2

Immunohistochemical Analysis of Protein Markers

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Immunohistochemistry was performed using the following antibodies: anti-BHLHE40 (HPA028921; Atlas Antibodies), anti-phospho-AMPKα (Thr172) (40H9; Cell Signaling Technology), anti-PPM1A (D18C10), or anti-PPM1F antibody (ab200394; Abcam). Briefly, a paraffin-embedded block was sliced into 5-μm-thick sections. The sections were deparaffinized and antigen was retrieved by Target Retrieval Solution (Agilent Dako; pH6 for BHLHE40 and pH9 for phospho-AMPKα, PPM1A, and PPM1F), then endogenous peroxidase was blocked with 0.3% hydrogen peroxide in methanol. The sections were incubated overnight with diluted primary antibody (1/200 in Antibody Diluent; Agilent Dako), then incubated with Envision+ Dual Link HRP (Agilent Dako) and visualized with 3, 3′ diaminobenzidine as a substrate. Hematoxylin was used for counterstaining. Specific staining was evaluated by the Allred scoring system (57 (link)).
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3

Mechanistic Study of Anticancer Drug Interactions

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Drugs employed in this study were carmustine (BCNU Nitrumon, Sintesa S.A., Bruxelles, Belgium), indinavir sulfate (IDV, Sigma-Aldrich, Milan, Italy), phlorizin (PHZ, Sigma-Aldrich), ritonavir (RTV, Sigma-Aldrich), and temozolomide (TMZ, Sigma-Aldrich). BCNU was resuspended in absolute ethanol; IDV in pure water; PHZ, RTV, and TMZ in DMSO (Sigma-Aldrich) and used at the indicated concentrations. Aphidicolin (Sigma-Aldrich) was used to treat U87MG cells at 1-μM concentration for 24 hours to block cell growth. Antibodies employed and dilutions were the following: anti-actin (1:5000, cat. A4700 Sigma-Aldrich), anti-AMPKα F6 (1:2000, cat. 2793 Cell Signaling Technology, Danvers, MA), anti–phospho-AMPKα Thr172 40H9 (1:1000, cat. 2535 Cell Signaling Technology), anti-GLUT1/SLC2A1 (1:10,000, cat. 07-1401 Merck-Millipore, Vimodrone, MI, Italy), anti–Golgin-97 CDF4 (1:3000, cat. A-21270, Thermo Fisher Scientific, Waltham, MA), anti-GFP (1:700, chicken polyclonal, Aves Labs, Tigard, OR). Species-specific secondary antibodies labeled with peroxidase (Thermo Fisher Scientific) or with Alexa Fluor 488 (1:500, Jackson ImmunoResearch, West Grove, PA) were employed, respectively, for Western blot or immunohistochemistry.
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4

Quantitative Immunoblotting Analysis of Signaling Proteins

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BMDM were washed three times with 2 ml of ice-cold PBS and lysed with 0.15 ml of M-PER mammalian protein extraction reagent with Halt protease and phosphatase inhibitors (Thermo Scientific). Equal amounts of protein per sample/lane were denatured and resolved by SDS-PAGE. Proteins were transferred to Immobilon-FL membranes (Millipore, Billerica, MA), and quantitative immunoblotting was performed using the Odyssey infrared immunoblotting detection system (LI-COR Biosciences, Lincoln, NE). Primary antibodies used were anti-CaMKK2 (6/CaM Kinase, 610544; BD Biosciences; dilution 1:1000); anti-actin (AC-40, catalog # A4700; Sigma-Aldrich; dilution 1:20000); anti-phospho-CaMK1 (Thr177; PA5-38434 ThermoFisher, dilution 1:500), anti-phospho-AMPKα (Thr172, 40H9; catalog # 2535; dilution 1:1000) and AMPKα (F6, catalog # 2793; dilution 1:1000) were from Cell Signaling (Danvers, MA). Secondary antibodies used were anti-mouse IgG Alexa Fluor 680 (catalog # A28183; Invitrogen; dilution 1:1000) and anti-rabbit IgG IRDye800-conjugated antibody (catalog # 611-132-002; Rockland Immunochemicals, Gilbertsville, PA; dilution 1:5000). All antibodies were used according to the manufacturer’s instructions. Images of uncut and unmanipulated blots are presented in Supplementary Fig. 12.
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5

Adiponectin Protein and Antibody Characterization

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Human recombinant full-length adiponectin protein (composed of the LMW, MMW, and HMW isoforms) with a C-terminal FLAG sequence (produced in HEK293 cells, cat. no. RD172023100) and the globular form of adiponectin protein with an N-terminal His-tag sequence (produced in Escherichia coli, cat. no. RD172112100) were purchased from BioVendor (BioVendor, LLC, Asheville, NC). The following antibodies were used: anti-adiponectin polyclonal antibody (cat. no. RD181023100; BioVendor), anti-LOX-1 (#1-1) (17 (link)), anti-p44/42 MAPK (extracellular signal-regulated kinase [Erk] 1/2) (cat. no. 9102, Cell Signaling, Danvers, MA), anti-phospho-p44/42 MAPK (Erk1/2) (Thr202/Tyr204) (cat. no. 9101, Cell Signaling), anti-AMPKα (F6; cat. no. 2793, Cell Signaling), anti-phospho-AMPKα (Thr172) (40H9; cat. no. 2535, Cell Signaling), horseradish peroxidase (HRP)-conjugated anti-rabbit IgG antibody (cat. no. NA934, GE Healthcare), donkey anti-chicken IgY (cat. no. AP194P, Millipore, Burlington, MA), sheep anti-apoB polyclonal antibody conjugated with HRP (cat. no. PP086, The Binding Site, Birmingham, UK), and anti-apoB chicken monoclonal antibody (HUC20) (18 (link), 19 (link)). HUC20 was developed as previously described (18 (link)). Epitope mapping showed that the HUC20 binding epitope of apoB is within the B1 region (amino acids 28–217 of apoB) (19 (link)).
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6

AMPK Phosphorylation Assay with PPM1A and PPM1F

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Cell lysates of 293T transfected with FLAG-tagged constructs of PPM1A-wild type, PPM1A-R174G, PPM1F, and PPM1F-R326A-I328A were precleared with mouse IgG and A/G-agarose suspensions (Santa Cruz). Then the lysates were incubated with anti-FLAG antibody (M5) and protein A/G-agarose suspensions (Santa Cruz). Immune complexes bound to protein A/G-agarose were precipitated and incubated at 30°C for 30 min with recombinant active AMPK (α1β1γ2) (PV6238; Thermo Fisher Scientific) in 1× NEB buffer for PMP and 1 mM MnCl2 (P0753S; New England Biolabs). Lambda Protein Phosphatase was used as a positive control (P0753S). The reaction mixtures were separated on 9% SDS-polyacrylamide gels and transferred to PVDF membranes. Phosphorylated AMPKα1 was immunodetected with anti-phospho-AMPKα Thr172 (40H9; Cell Signaling Technology).
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