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10 protocols using caspase 8

1

Protein Extraction and Western Blot Analysis

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Experimental monolayers were washed with serum-free media, and then total and fractionated proteins were extracted by cell lysis buffer (Cell Signaling Technology, Danvers, MA). The lysates were centrifuged at 12,000 g for 20 min at 4°C. An equal amount of protein after concentration was determined by the Bradford assay (Bio-Rad, Hercules, CA) was loaded on SDS-PAGE and transferred to nitrocellulose membranes (Bio-Rad). After blocking, specific antibodies such as ADRP, FOXO3a, caspase-8, and β-actin from ABclonal Biotechnology (Wuhan, China); Perilipin-1 from Cell Signaling Technology (Danvers, MA); and vimentin from Abcam (Cambridge, MA) were used to perform detection. Finally, each protein was detected using an enhanced chemiluminescence system (GE Healthcare, Chicago, IL, USA). Blot images were digitized (Chemidoc, Bio-Rad, Milan, Italy), and the area of each band was quantified using the computerized imaging system (QuantityOne, Bio-Rad). Relative OD (arbitrary units) was normalized for control bands in each series and for protein loading (as probed by anti-actin blots). Each test was performed in triplicate experiments.
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2

BoHV-1 Protein Detection and Apoptosis Analysis

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The purified BoHV-1 gD protein (20 μg) or BoHV-1 (20 μg) was separated through sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS-PAGE) and then transferred to a polyvinylidene difluoride (PVDF) membrane (Millipore Schwalbach, Germany). Next, the membrane was blocked with 5% bovine skimmed milk and then incubated with BoScFv-PE38 labeled with horseradish peroxidase (HRP) at 37°C for 1.5 h. Thereafter, the membrane was washed three times with PBS containing 0.5% Tween-20. The membrane was finally developed with ECL solution (ThermoFisher Scientific, United States) and visualized with the Odyssey Infrared Imaging System (LI-COR Biosciences).
The expression of apoptotic proteins in BoHV-1-infected MDBK cells after treatment with BoScFv-PE38 was analyzed as described by Decker et al. (2004) (link). Fifty micrograms of protein was separated via 12% SDS-PAGE and transferred to PVDF membranes. The samples were subsequently hybridized with antibodies against PARP-1, Bcl-2, Bid, caspase-3, caspase-8, caspase-9 and β-actin (ABclonal Biotech Co., Ltd, China). Blots were developed using Super Signal chemoluminescent substrates (Pierce, KMF GmbH, St. Augustin, Germany).
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3

Expression and Characterization of BoHV-1 gD-GFP Fusion Protein

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The pET28a expression system was obtained from GE Healthcare; the pEGFP-N1 vector was obtained from Clontech; The DNA encoding for segment from 259 amino acids to 345 amino acids of glycoprotein D (AFB76672.1) was amplified by polymerase chain reaction with the primers as following: Sense primer: 5′-GAATTCATGGAGGAGTCGAAGGGC-3′ and anti-sense primer:5′-CTCGAGGATGGCTTCGAGGCTCG-3′, and the DNA fragment was cloning into the pEGFP-N1 vector for construction of the pEGFP-N1-gD, which was used to efficiently express green fluorescent protein (GFP) fused gD protein in 293T cell. Calf antiserum against BoHV-1 was from China Veterinary Culture Collection Center. A mouse anti-His monoclonal antibody (McAb), Alexa Fluor 555- conjugated anti-His antibody, FITC-labeled goat anti-mouse antibody and TRITC-labeled goat anti-mouse antibody were purchased from ThermoFisher Scientific (United States), and a FITC-labeled rabbit anti-bovine antibody was purchased from BioVision (United States). The antibodies against PARP-1, Bcl-2, Bid, caspase-3, caspase-8, caspase-9 and β-actin were purchased from ABclonal Biotech (China). The BoScFv-PE38 was labeled with horseradish peroxidase (HRP) by Sangon Biotech Co., Ltd. (China).
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4

Protein Expression Analysis in DF-1 Cells

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Forty-eight hours after transfection, DF-1 cells were lysed in RIPA buffer (Beyotime, Nantong, China) supplemented with 100 mM phenyl methane sulfonyl fluoride (PMSF) to exact total protein. Protein concentrations were measured by the Pierce BCA Protein Assay Kit (Transgen, Shanghai, China). An equal amount of protein was separated by 12% SDS-polyacrylamide gel electrophoresis (Beyotime, China) and blocked with 5% skim milk for 1h. Then, the membranes were separately probed with p-JUN (ABclonal, AP0048), p-FOS (ABclonal, AP0038), p-JNK1 (ABclonal, AP0631), Bcl-2 (ABclonal, A19693), Caspase8 (ABclonal, A0215), Caspase9 (ABclonal, A18676), Caspase3(ABclonal, A19654), GAPDH (Abmart, M20024) overnight at 4°C with a final dilution of 1:5000 (v/v). Finally, the membrane was incubated with the secondary antibody for 1h after TBST washing. The enhanced chemiluminescence (ECL) detection system (Bio-Rad) was used to detect protein expression.
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5

Tanshen Compounds: Apoptosis Mechanisms

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All extracted compounds of Tanshen were from Shanghai Institute of Materia Medica (Chinese Academy of Sciences); Captisol was derived from MCE (MedChem Express); Caspase 3, Caspase 8, Caspase 9, Aif, PARP, Bax, FADD and Cyst3 were all from Abclonal; FITC-Annexin V and PI were from BD Biosciences (Sandiego); Matrigel was from Corning; CCK kit and crystal violet were from Yeasen (China); Nude mice were provided from Shanghai XinHua Hospital.
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6

Renal Cell Culture and Urate Metabolism

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Cell culture medium and human primary renal PTECs were provided by ScienCell (San Diego, CA, United States). Anti-SLC2A9 (URAT1) antibodies, TSG101, CD63, caspase-1, GSDMD, IL-1β, caspase-3, caspase-8, caspase-9, cytochrome c, Bcl-2, and Bax were purchased from ABclonal (Wuhan, China). Oxonic acid (OA) and UA were provided by Sigma (St. Louis, MO, United States). CIAS1/NALP3, GAPDH, and anti-GLUT9 were provided by Abcam (Cambridge, United Kingdom). In addition, the CCK-8 assay kit was provided by Jiwei Biological Technology (Shanghai, China).
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7

CGA Modulates Cancer Cell Apoptosis

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Roswell Park Memorial Institute-1640 (RPMI-1640) was purchased from Thermo Fisher Scientific (Waltham, MA, USA). Fetal bovine serum (FBS) and dimethyl sulfoxide (DMSO) were purchased from GIBCO (Grand Island, NY, USA). CGA (Number C109403, CAS number 327-97-9, HPLC≥98%) was obtained from Aladdin (Shanghai, China). The following antibodies were purchased from ABclonal Biotechnology Co., LTD (Wuhan, China): β-actin, MMP2, MMP9, E-cadherin, Vimentin, Bax, Bcl-2, caspase-3, caspase-8, Ki-67, SRC, MAPK1, MAPK8, and HRP-labeled goat anti-rabbit IgG. CGA was dissolved in DMSO in a stock solution and was stored in a dark bottle at 4°C. FITC Annexin-V Apoptosis Detection Kit I (556,547) was purchased from BD (USA). Cell Counting Kit-8 was purchased from Dojindo (Japan). Hoechst 33342 staining solution, TUNEL staining Kit, BCA protein assay kit, and cell-cycle detection kit were purchased from Beyotime (Shanghai, China).
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8

Western Blot Analysis of Astrocyte Proteins

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Proteins from astrocytes were separated by 12% SDS-PAGE after treatment, and samples were analyzed by western blotting. Proteins in the gels were transferred to nitrocellulose membranes using a semidry transfer unit at 0.04 mA for 50 min. The membranes were washed with TBS/T three times and then with a blocking buffer. The membranes were incubated overnight in antibodies against GFAP (Proteintech, USA), Bax (ABclonal, USA), Bid (ABclonal, USA), Caspase-3 (ABclonal, USA), Caspase-8 (ABclonal, USA), Bcl-2 (ABclonal, USA), p53 (ABclonal, USA), and β-actin (Proteintech, USA). The membranes were washed with TBS/T three times and then incubated with a horseradish peroxidase-conjugated anti-rabbit or anti-mouse antibody (Sigma–Aldrich, USA). Immunoreactive bands were detected using ECL reagents (EMD Millipore, USA) and captured by a ChemiDoc Imaging System (Bio-Rad, USA). ImageJ software analysis was employed to measure the image densitometry of target protein bands.
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9

Emodin Modulates Cell Death Pathways

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Dulbecco’s modified Eagle’s medium/nutrient mixture F12 (DMEM/F12), fetal bovine serum (FBS), and dimethyl sulfoxide (DMSO) were purchased from GIBCO (Grand Island, NY, USA). Emodin (CAS No. 518–82-1, HPLC>98%) was obtained from Dalian Meilun Biotechnology Co. Ltd. (Dalian, China). RNAiso plus, SYBR Premix Ex Taq II and ROX reference dye were purchased from TAKARA (Dalian, China). All primers were designed and synthesized by TSINGKE (Wuhan, China). The following antibodies for western blot analysis were purchased from ABclonal Biotechnology Co., Ltd. (Wuhan, China): GAPDH; caspase-3; caspase-8; TNF-α; RIP1; RIP3; MLKL; and HRP-labeled goat anti-rabbit IgG. Emodin was dissolved in DMSO as a stock solution and stored in a dark bottle at 4 °C. Nec-1 (CAS No.: 4311-88-0) and GSK872 (CAS No.:1346546–69-7) were purchased from MedChemExpress (Shanghai, China). The FITC Annexin V Apoptosis Detection Kit I (556547) was purchased from BD (USA). CCK-8 was purchased from Dojindo (Japan). The Apoptosis and Necrosis Assay Kit, Cell Cycle and Apoptosis Kit, and LDH Assay Kit were all purchased from Beyotime (China).
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10

Western Blot Antibody Protocol

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Antibodies against mouse, anti-rabbit IgG-conjugated horseradish peroxidase, BiP, caspase-6, caspase-8, CHOP, cytochrome c (Cyt C), B-cell lymphoma 2 (Bcl-2), Bcl-2-associated X (Bax), and activating transcription factor 6 (ATF6) were purchased from ABclonal (Woburn, Massachusetts, USA). Antibodies against β-actin, cleaved caspase-3 (cCaspase-3), and p-JNK were purchased from Cell Signaling Technology (Danvers, MA, USA). Antibodies against activating transcription factor 4 (ATF4) was purchased from Abcam (Cambridge, UK).
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