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8 protocols using anti nlrp3

1

Macrophage Responses to N. aromaticivorans

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Macrophages were harvested from the peritoneal cavity of WT and Lgals3−/− untreated mice using peritoneal lavage. Complete Dulbecco's modified Eagle's medium (6 ml) supplemented with FBS (10%), glutamine (2 mM), 100 U/ml penicillin, and 100 mg/ml streptomycin was injected into the peritoneal cavity and the medium containing cells was retrieved. The extracted cells were depleted of red blood cells using red blood cell lysis buffer containing 8.3 g/l ammonium chloride in 10 mM Tris-HCl, pH 7.5 and washed by centrifugation.
Cells were stimulated with N. aromaticivorans for 24 h (cell/bacteria ratio 1:10) at 37°C in a 5% CO2 incubator. Where indicated, cells were preincubated with the caspase-1 inhibitor Z-YVAD-FMK (10 μmol/L; Bachem AG, Bubendorf, Switzerland). After incubation, the cell supernatants were collected and cells were labeled with anti-F4/80 (BioLegend), anti-IL-1β (BD Pharmingen), and anti-NLRP3 (R&D systems) fluorochrome-conjugated monoclonal antibodies or isotype matched controls for flow cytometry. The levels of IL-1β and IL-6 in cell supernatants were determined using mouse Duoset ELISA kits (R&D Systems).
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2

Western Blot Immunodetection Protocol

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Following separation of samples by SDS-PAGE and transfer to 0.2 μM nitrocellulose resin (BioRad, Hercules CA), the following antibodies were used. For cell lysates: anti-caspase-1 p10 (1:200, Santa Cruz Biotechnology #514), anti-HSP-90 (1:1000, BD Biosciences, San Jose CA), anti-NLRP3 (1:500, R&D Systems, Minneapolis MN), anti-α-tubulin (1:10000, Sigma), anti-GAPDH (1:1000, Santa Cruz Biotechnology C-9), anti-α-enolase (1:1000, Cell Signaling Technology, Danvers MA). For cell supernatant: anti-IL-1β (1:200, Cell Signaling Technology). HRP-conjugated α-mouse and α-rabbit secondary antibodies were from GE Healthcare.
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3

Investigating HMGB1-NLRP3 Inflammasome Interactions

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Recombinant human high mobility group box 1 (HMGB1), anti-NLRP3, and anti-IgG antibodies were purchased from R&D Systems, Inc. (Minneapolis, MN). NLRP3-inflammasome inhibitor, MCC-950 was purchased from Invivogen (San Diego, CA). Anti-IL-1β, anti-TLR2, anti-TLR4, anti-RAGE, and anti-caspase-1 antibodies were from Abcam (Cambridge, MA). β-Actin antibody was purchased from Santa Cruz Biotechnology Inc. (Beverly, MA), and anti-ASC antibody from Adipogen (San Diego, CA).
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4

Detailed Immunological Reagents Protocol

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Ultrapure lipopolysaccharide (LPS) (E. coli 0111:B4, cat. no. tlrl-3pelps), standard LPS (E. coli 0111:B4, cat. no. tlrl-eblps), ATP (cat. no. tlrl-atpl), nigericin (cat. no. tlrl-nig), and MSU (cat. no. tlrl-msu) were purchased from InvivoGen, lipofectamine 3,000 transfection reagent (cat. no. L3000015) was purchased from Thermo Fisher, C646 (S7152) was bought from Selleck Chemicals, mouse immunoglobin IgG protein (cat. no. ab198772) was purchased from Abcam, Protein A/G PLUS-Agarose (cat. no. sc-2003) was obtained from Santa Cruz, cell lysis buffer (CLB) (cat. no. 9803) was purchased from Cell Signaling Technology, and mouse IL-1β (cat. no. 88–7013), tumor necrosis factor-α (TNF-α) (cat. no. 88-7324), interleukin-6 (IL-6) (cat. no. 88-701364), and human IL-1β (cat. no. BMS22) ELISA kits were purchased from Thermo Fisher.
Anti–IL-1β (1:1,000, AF-401-NA; RRID:AB_416,684) was purchased from RD System, anti-NLRP3 (1:1,000, Cryo-2) and ASC (1:1,000, AL177) were purchased from Adipogen, anti–caspase-1 (1:1,000, ab179515), and anti-NEK7 (1:5,000, ab133514) were purchased from Abcam; Anti–β-actin (1:10,000, BH10D10), anti-p65 antibody (1:1,000, 8242), anti–p-p65 antibody (1:1,000, 3033), and GAPDH antibody (1:2,000, 5,174) were purchased from Cell Signaling Technology, and DyLight 488–labeled secondary antibody (1:50, A120-100D2) was purchased from InvivoGen.
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5

Inflammasome Protein Expression in Nasal Mucosa

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The protein expressions of HMGB1 and components of inflammasomes were examined by western blotting. Total protein was extracted from the nasal mucosa samples using RIPA lysis buffer and protein concentrations were measured by BCA assay. Protein lysates were separated on 12% Sodium Dodecyl Sulfate (SDS) – Polyacrylamide gels and transferred to Polyvinylidene Difluoride (PVDF) membranes. The membranes were blocked for 1 h with 5% fat-free milk in Tris-Buffered Saline containing Tween (TBST) and incubated overnight at 4 °C with the appropriate dilution of primary antibodies: anti-Nlrp3 (R&D Systems, Minneapolis, MN, USA, diluted 1:300), anti-AIM2 (Abcam, Cambridge, MA, USA, diluted 1:1,000), anti-Asc (Abcam, diluted 1:1,000), anti-caspase-1 (Biovision, Milpitas, CA, USA, 1:200), and anti-β-actin (Millipore, Billerica, MA, USA, diluted 1:3,000). After washing, the membranes were incubated for 1 h at room temperature with the appropriate HRP-conjugated secondary antibody (diluted 1:3,000). The protein bands were visualized by BeyoECL Plus (Beyotime, Haimen, Jiangsu, China), and Gel-Pro analyzer 4.0 software (Media Cybernetics, Inc., Rockville, MD, USA) was used for relative quantification, with β-actin as the internal control.
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6

Protein Expression Analysis in Mouse Muscle

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The FDB or soleus muscles from mice were homogenized by sonication in cold RIPA lysis buffer, containing 140 mM NaCl, 1 mM EDTA, 1 mM EGTA, 1 mM BAPTA, 20 mM Tris-HCl, pH 7.5, 1% Triton X-100, and Protease Inhibitor Cocktail (Roche Diagnostics, Germany), as described previously [20 (link)]. The samples were loaded onto a 12% SDS-polyacrylamide gel and then transferred to a polyvinylidene difluoride membrane (Millipore, Burlington, MA, USA). The primary antibodies used were: anti-NLRP3 (1:500) from R&D Systems (MAB7578, Minneapolis, MN, USA), anti-IL-1β (1:500; SC-32294), anti-caspase-1 (1:500; SC-56036), anti-ASC (1:1000; SC514414), and anti-GSDMD (1:500; SC-393581) from Santa Cruz Biotechnology (Dallas, TX, USA), and anti-GADPH (1:20000) from Sigma-Aldrich (G9545; St. Louis, MO, USA). After washing, the membranes were incubated for 1.5 h with secondary anti-rabbit, anti-rat, or anti-mouse antibodies, as appropriate (Sigma-Aldrich, St. Louis, MO, USA). Western blotting detection reagents (LumiFlash™ Infinity Chemiluminescent Substrate, Taipei, Taiwan) were used following the manufacturer’s instructions, and chemiluminescence was detected using a ChemiDoc Imaging System from Bio-Rad (Hercules, CA, USA). The intensity of the bands was quantified by densitometry, with the use of ImageJ software version 1.44p (NIH, Bethesda, MD, USA).
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7

Protein Expression Analysis of NLRP3 and Caspase-1

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Protein expression of NLRP3 and caspase-1 was determined using protein analysis of thoracic aortas of in vivo and in vitro all groups. Samples were homogenized in lysis buffer and proteins were collected. Proteins (30 μg) were separated by electrophoresis on 10 or 12% polyacrylamide gels, transferred to 0.22 μm nitrocellulose membranes and blocked using 5% bovine serum albumin (BSA) in Tris buffered saline (TBS) and 0.1% Tween 20 for 1 h. Primary antibodies were incubated overnight at 4°C as follows: anti-NLRP3 (1:500 dilution; R&D Systems), anti-caspase-1 (1:1,000 dilution; Novus Biologicals), anti-β-actin-peroxidase (1:5,000 dilution; Sigma-Aldrich).
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8

Quantifying Neurobiological Markers in Mouse Brain

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The mouse brain was extracted using protein extraction buffer (T-PER, Thermo Fisher, USA) containing protease and phosphatase inhibitors (Thermo Fisher, USA). Equal amounts of protein extracts (20µg) were separated by SDS-PAGE and transferred onto a nitrocellulose lter (NC) membrane (GE Healthcare Life Sciences, USA). After being blocked with 5% non-fat milk, membranes were incubated at 4°C overnight with primary antibodies (all at 1:1000) as follows: anti-β-actin (Abcam, USA), anti-p-mTOR(Abcam, USA), anti-GDNF(Abcam, USA), anti-BNDF(Abcam, USA), anti-CNTF(Abcam, USA), anti-Bcl-2(Abcam, USA), anti-Bax (Abcam, USA), anti-p110α-PI3K (C73F8) (Cell Signaling Technology, MA), anti-p-Akt (Ser473) (Cell Signaling Technology, MA), anti-β-catenin (Cell Signaling Technology, MA), anti-Fzd1 (R&D system, USA), anti-NLRP3 (R&D system, USA), anti-WNT1 (ABGENT, USA), anti-iNOS/NOS(BD, USA) or anti-Arginase1 (BD, USA). After being washed in TBST, the immunoblots underwent incubation with horseradish peroxidase-conjugated secondary antibodies (Jackson Lab, USA) for 1h. Bands were visualized and analyzed using a ChemiDoc XRS (Bio-Rad, USA) and Image Lab(Bio-Rad, USA).
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