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Clarus 600 t gc ms

Manufactured by PerkinElmer
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The Clarus 600 T GC–MS is a gas chromatography-mass spectrometry (GC-MS) instrument manufactured by PerkinElmer. It is designed for the separation, identification, and quantification of chemical compounds in complex mixtures. The Clarus 600 T GC-MS combines a gas chromatograph with a mass spectrometer, providing high-performance analytical capabilities for a wide range of applications.

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10 protocols using clarus 600 t gc ms

1

Fatty Acid Profiling by GC-MS

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The total lipids were transesterified into fatty acid methyl esters (FAMEs) using the acid-catalyzed method [20 (link)]. The separation, identification and quantitation of the FAMEs were carried out by gas chromatography–mass spectrometry (GC–MS), using a PerkinElmer Clarus 600 T GC–MS (PerkinElmer, Inc., Shelton, CT, USA) [21 (link)]. The samples (1 μL) were injected into a Supelcowax 10 (60 m × 0.25 mm i.d., 0.25 μm film thickness; Supelco Inc., Bellefonte, PA, USA) capillary column in the split injection mode (split ratio 1:24). Helium was used as carrier gas with a flow rate of 0.8 mL min−1. The GC program was as follows: initial temperature, 140 °C; increase by 7 °C min−1 to 220 °C; and hold for 23 min. The injector temperature was set at 210 °C. The mass spectra were recorded in the positive-ion mode at 70 eV and a trap current of 100 μA with a source temperature of 150 °C. The mass scans were performed within the range of m/z 22–395 (0.14 scan s−1 with an intermediate time of 0.02 s between the scans). FAMEs were identified by comparison of their retention times with those of the authentic standards (37 component FAME Mix, Supelco no. 47885-U) and the resulting mass spectra to those in the database (NIST MS Search 2.0). The amount of each fatty acid was calculated as peak area percentage of total fatty acids.
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2

Fatty Acid Profiling of Hemp Seed Oil

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Hemp oil extraction was used in this experiment to determine the fatty acids in the seeds. The chemicals used for the preparation of fatty acid methyl esters (FAMEs) were purchased from Sigma-Aldrich (Steinheim, Germany), while the FAMEs standard (37 component FAME Mix, SUPELCO) was from Supelco (Bellefonte, PA, USA). The results obtained were checked against the dry matter.
Fatty acid methyl esters (FAMEs) of the total lipids (0.2 g oil) were produced via acid-catalyzed transesterification using 1% sulphuric acid in methanol [30 (link),31 (link)].
The methylated fatty acids were determined with a gas chromatograph (GC) coupled to a mass spectrometer (MS) (PerkinElmer Clarus 600 T GC-MS; Shelton, CT, USA) [32 (link)]. A 0.5 μL sample was injected into a 60 m × 0.25 mm i.d., 0.25 μm film thickness SUPELCOWAX 10 capillary column (Supelco Inc.). The operation conditions were as follows: injector temperature 210 °C; helium carrier gas flow rate 0.8 mL/min; split ratio 1:24; oven temperature 140 °C (hold 2 min) to 220 °C at 7 °C/min (hold 19 min); electron impact ionization voltage 70 eV; trap current 100 μA; ion source temperature 150 °C; mass range 22–395 m/z (0.14 scans/s with an intermediate time of 0.02 s between the scans).
The amount of each fatty acid was expressed as area percentages calculated from the total area of identified FAMEs.
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3

Fatty Acid Profiling of Tomato Seed Oils

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An aliquot (10–15 mg) of the tomato seed oils was transesterified into FAMEs, using an acid-catalyzed procedure, as described previously [34 (link)] and analyzed by GC-MS. A PerkinElmer Clarus 600 T GC–MS (PerkinElmer, Inc., Shelton, CT, USA) system was used, equipped with a Supelcowax 10 capillary column (60 m × 0.25 mm i.d., 0.25 μm film thickness; Supelco Inc., Bellefonte, PA, USA). The column temperature was programmed from 140 to 220 °C at a rate of 7 °C/min and held for 23 min. The carrier gas (helium) was adjusted to a constant flow rate of 0.8 mL/min and the mass spectra were recorded in EI (positive ion electron impact) mode. The mass scans were performed from 22 to 395 m/z. Identification of the fatty acids was made by comparing peak areas with known standards and compounds listed in an MS database using NIST MS Search 2.0 software.
The quantitative analysis of FAMEs was performed using the total ion current chromatograms and the prevalence (%) of each fatty acid was computed as follows:
where IFA is individual fatty acid area and TAFA is total area of fatty acids.
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4

Fatty Acid Composition Analysis by GC-MS

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Fatty acid methyl esters (FAMEs) were obtained from total lipids using the acid-catalyzed transesterification procedure described by Christie [28 ]. The FAMEs were analyzed by gas chromatography-mass spectrometry (GC-MS) using a PerkinElmer Clarus 600 T GC-MS (PerkinElmer, Inc., Shelton, CT, USA) fitted with a Supelcowax 10 (60 m × 0.25 mm i.d., 0.25 μm film thickness; Supelco Inc., Bellefonte, PA, USA) capillary column, using helium as a carrier gas (flow rate of 0.8 mL/min) [29 (link)]. The temperature program for the column was: initial temperature, 140 °C, increase by 7 °C/min to 220 °C, and hold for 23 min. The injection volume was 0.5 μL (split ratio of 1:24) and the injector was set at 210 °C. The MS operating conditions were as follows: electron impact ionization voltage 70 eV (E.I., positive ion electron impact mode), trap current of 100 μA, source temperature of 150 °C, scan rate 0.14 scan/s and scanned mass range 22–395 m/z. The identification of FAMEs was achieved by comparing their retention times with those of known standards (37 component FAME Mix, SUPELCO # 47885-U) and the resulting mass spectra to those in our database (NIST MS Search 2.0). The compositions of fatty acids in the studied lipids were expressed as percentages (%) of the total FAME peak areas. All experiments were performed in triplicate.
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5

Determination of 3-PBA in Urine Samples

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Urine samples were prepared and analyzed for 3-PBA using previously reported methods [9 ]. The samples were collected using 15 mL polystyrene conical tubes (Sarstedt AG & Co., Numbrecht, Germany). An aliquot (5 mL) of each urine sample was mixed with HCl and heated at 90°C for one hour. After heating, the samples were cooled, and n-hexane and 0.1M NaOH were added to the mixture. The resulting solution was extracted and dried in a nitrogen stream. The dried samples were mixed with toluene and N-(tert-butyldimethylsilyl)-Nmethyl-trifluoroacetamide and heated at 70°C. After cooling the samples on ice, samples were measured by PerkinElmer Clarus 600T GC-MS (PerkinElmer, Waltham, MA, USA). Internal quality control was achieved through analysis of control urines. Variation coefficient was 1.1% and the limit of detection was 0.014 mg/L under study. External quality control was achieved through participation in tests of the German External Quality Assessment Scheme operated by the University Erlangen-Nuremberg.
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6

Volatile Organic Compounds and Respirable Dust Analysis

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All VOC air samples (solid charcoal sorbent tube and SPME) were shipped to a chemical laboratory at Thammasat University for analysis. For the solid charcoal sorbent tubes, the samples were analyzed by gas chromatography with a flame ionization detector (Clarus 600 T GC/FID; Perkin Elmer, Santa Clara, CA, USA), while the SPME samples were analyzed by gas chromatography with mass spectrometer (Clarus 600 T GC/MS; Perkin Elmer, USA) equipped with a J&W DB-VRX 20 m microbore capillary column with a 0.18 μm thick film (Agilent Technologies, Santa Clara, CA, USA). In all 49 VOCs, the components were analyzed against an EPA 502/524 volatile organic calibration mix. The VOCs included those with known health effects: Trichloromethane, Benzene, Trichloroethylene, Toluene, Ethylbenzene, Xylene, and Styrene. For respirable dust, each filter was weighed, including the field blanks, using a digital balance The sampling collection activities are shown in Figure 5, Figure 6 and Figure 7.
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7

Vegetable Oil Fatty Acid Profiling

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The fatty acids content from vegetable oil before and after processing within the kitchen was analyzed by GC. The fatty acids profile of the total lipids was determined by acid-catalyzed transesterification by using 1% sulphuric acid in methanol [48 ,49 (link)]. The methylated fatty acids were determined with a gas chromatograph coupled to a mass spectrometer (model PerkinElmer Clarus 600 T GC-MS; PerkinElmer, Inc., Shelton, CT, USA) [50 (link)]. A 0.5 μL sample was injected into a 60 m × 0.25 mm i.d., 0.25 μm film thickness SUPELCOWAX 10 capillary column (Supelco Inc., Darmstadt, Germany). The operation conditions were as follows: injector temperature 210 °C; helium carrier gas flow rate 0.8 mL/min; split ratio 1:24; oven temperature 140 °C (hold 2 min) to 220 °C at 7 °C/min (hold 23 min); electron impact ionization voltage 70 eV; trap current 100 μA; ion source temperature 150 °C; mass range 22−395 m/z (0.14 scans/s with an intermediate time of 0.02 s between the scans). The fatty acids content was identified by comparing their retention times with those of known standards (37 components FAME Mix, Supelco no. 47885-U, Darmstadt, Germany) and the resulting mass spectra to those in the database (NIST MS Search 2.0). The amount of each fatty acid was expressed as a percentage of total fatty acid content.
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8

Profiling Fatty Acids in ASTRA Roots

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For the investigation of the fatty acid profile of the ASTRA roots, an acid-catalyzed procedure was used. Briefly, a sample of the total lipid extract (10–15 mg) was transesterified into fatty acid methyl esters (FAMEs), as indicated in a previous study [39 (link)]. The apparatus used for this analysis was a GC-MS (PerkinElmer Clarus 600 T GC–MS, PerkinElmer, Inc., Shelton, CT, USA) equipped with a Supelcowax 10 capillary column (60 m × 0.25 mm i.d., 0.25 μm film thickness; Supelco Inc., Bellefonte, PA, USA). The temperature in the column was programmed to increase with a rate of 7 °C/min, from 140 up to 220 °C and maintained there for 23 min. The utilized carrier gas was helium, with a continuous flow rate of 0.8 mL/min.
The FAMEs were identified by comparing their retention times to those of the commercial standard mix of fatty acids (37 components FAME Mix, Supelco no. 47885-U) and the resulted mass spectra to those found in our database (NIST MS Search 2.0). The same database of compounds was used to quantify each fatty acid, by calculating the individual peak area percentage from the total amount of fatty acids.
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9

Fatty Acid Methyl Esters Analysis

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The FAMEs (fatty acid methyl esters) were prepared using acid catalyzed transesterification of the total lipid fractions [49 (link)].
The analysis of FAMEs was achieved by capillary gas chromatography, using a PerkinElmer Clarus 600T GC-MS (PerkinElmer, Inc., Shelton, CT, USA). The column of the GC was a Supelcowax 10 (60 m × 0.25 mm i.d., 0.25 µm film thickness; Supelco Inc., Bellefonte, PA, USA) [49 (link)]. The working temperature of the oven was set at 140 °C, then increased to 220 °C at 7 °C/min, and kept for 23 min at 220 °C. The injection volume was 0.5 µL (split ratio of 1:24) and the temperature of the injector was set at 210 °C. The used carrier gas was helium, with a constant flow rate of 0.8 mL/min. Mass spectra were recorded at 70 eV and using a trap current of 100 µA with a source temperature of 150 °C. The MS was scanned at m/z 22–395 for all GC-MS experiments. The identification of fatty acids was accomplished by comparing their retention times with those of known standards and the resulting mass spectra to those in the database (NIST MS Search 2.0). The amount of each fatty acid was expressed as peak area percentage of total fatty acids.
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10

Fatty Acid Profiling by GC-MS

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By using the acid‐catalyzed transesterification method (Christie, 1989), fatty acid methyl esters (FAMEs) were determined employing a PerkinElmer Clarus 600T GC‐MS (PerkinElmer, Inc.) equipped with a SUPELCOWAX 10 (Supelco Inc.) capillary column (60 m × 0.25 mm i.d., 0.25 μm film thickness) and helium as carrier gas (0.8 ml/min flow rate). The initial oven temperature (140°C) was increased by 7°C/min to 220°C and kept 23 min at 220°C. The injection volume was 0.5 μl (split ratio of 1:24), and the injector temperature was set at 210°C. The positive ion electron impact (EI) mass spectra was recorded at an ionization energy of 70 eV and the trap current of 100 μA, with the source temperature of 150°C and a scanned mass range of 22–395 m/z. FAMEs were identified twofold: (a) by correlating the retention times with those of known standards (37 component FAME Mix, SUPELCO, Art. No. 47885‐U) and (b) by comparing their mass spectra with the data provided by the MS database (NIST MS Search 2.0). Fatty acids were expressed as percentage (%) of total fatty acids. Analyses were carried out in triplicate, and the mean values were reported.
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