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Modfit version 4

Manufactured by Verity Software House
Sourced in United States

ModFit version 4.0 is a software application designed for analyzing and modeling flow cytometry data. It provides tools for cell cycle analysis, DNA content analysis, and other related applications.

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10 protocols using modfit version 4

1

Apoptosis Assay with Annexin V-FITC

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Huh-7 and Hep3B cells (1×105 cells/well) were seeded into six-well plates. Once they reached confluence (70–80%), the cells were collected (300 × g for 3 min at room temperature) and incubated with Annexin V-FITC (5 µl) and propidium iodide solution (5 µl; Biogot Technology Co., Ltd.) at room temperature for 15 min according to the manufacturer's instructions. Cells were subsequently suspended in 500 µl binding buffer. Cell apoptosis progression was analyzed using flow cytometry (FACSAria; BD Biosciences). All data were analyzed with ModFit version 4.0 (Verity Software House, Inc.)
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2

Cell Apoptosis and Cell Cycle Analysis

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Huh-7 and Hep3B cells (1×105 cells) were seeded into 6-well plates. Once they reached confluence, the cells were collected and incubated with Annexin V-FITC (5 µl) and propidium iodide (PI) solution (5 µl; Biogot Technology Co., Ltd.) at room temperature for 15 min according to the manufacturer's instructions. Cells were subsequently suspended in 400 µl binding buffer. For cell cycle analysis, Huh-7 and Hep3B cells were collected and fixed in 75% ethanol at −20°C overnight. The fixed cells were washed with PBS and incubated with RNase A for 20 min at room temperature. These cells were stained with PI and incubated in the dark for 30 min at 4°C. Cell apoptosis and cell cycle progression were analyzed using flow cytometry (BD Biosciences). The percentages of cells within each phase of the cell cycle were analyzed with ModFit version 4.0 (Verity Software House, Inc.) and CellQuest version 5.1 (Thermo Fisher Scientific, Inc.).
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3

Cell Cycle Analysis of ICC Cells

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ICC cells (1.5×105 cells) were seeded into 100-mm culture dishes. Twenty-four hours after seeding, the cells were treated with 0.1 or 0.3 mg/ml vehicle (0.1% DMSO) for 24 h. After treatment, the cells at 70–80% confluence were digested into a single-cell suspension, fixed in 70% ethanol, stained with propidium iodide (PI), and analyzed by flow cytometry. In addition, the percentages of cells within each phase of the cell cycle were analyzed with ModFit version 4.0 (Verity Software House, Inc., Topsham, ME, USA) and CellQuest version 5.1 (Thermo Fisher Scientific, Inc.).
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4

Apoptosis Detection in A549 and H1975 Cells

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For apoptosis, transfected A549 and H1975 cells were seeded into 6-well plates. Once they reached confluence (60-70%), the cells were collected and incubated with Annexin V-FITC (5 µl; Biogot Technology Co., Ltd.) and propidium iodide solution (5 µl; Biogot Technology Co., Ltd.) at room temperature for 15 min according to the manufacturer's instructions. Cells were subsequently suspended in 400 µl binding buffer (Biogot Technology Co., Ltd.). Early + late stage apoptosis was analyzed using a FACSAria flow cytometer (BD Biosciences). All data were analyzed with ModFit version 4.0 (Verity Software House, Inc.).
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5

Apoptosis and Cell Cycle Analysis

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To evaluate cell apoptosis, SCC-9 or H357 cells (1×105 cells) was seeded into 6 well plates. Once they reached confluence, cells were collected and incubated with Annexin V-FITC (5 µl) and propidium iodide (PI) solution (5 µl; Biogot Technology Co., Ltd.) at room temperature for 15 min according to the manufacturers' instructions. Cells were subsequently suspended in 400 µl binding buffer. To evaluate the cell cycle, SCC-9 and H357 cells were collected and fixed in 75% ethanol at −20°C overnight. Then, the fixed cells were washed with PBS and incubated with RNase A for 20 min at room temperature. These cells were stained with PI and incubated in the dark for 30 min at 4°C. Cell apoptosis and cell cycle progression were analyzed using flow cytometry (BD Biosciences). The percentages of cells within each phase of the cell cycle were analyzed with ModFit version 4.0 (Verity Software House, Inc.) and CellQuest version 5.1 (Thermo Fisher Scientific, Inc.).
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6

Evaluating Cell Apoptosis by Flow Cytometry

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For cell apoptosis, after transfection, MDA-MB-231 and MCF-7 cells were seeded into 6-well plates. Once they reached confluence (60-70%), cells were collected and incubated with Annexin V-FITC (5 µl) (Biogot Technology Co., Ltd.) and propidium iodide (PI) solution (5 µl; Biogot Technology Co., Ltd.) at room temperature for 15 min according to the manufacturer's instructions. Cells were subsequently suspended in 400 µl binding buffer (Biogot Technology Co., Ltd.). Cell apoptosis progression was analyzed using flow cytometry (FACSAria; BD Biosciences). All data were analyzed with ModFit version 4.0 (Verity Software House, Inc.)
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7

Cell Cycle Analysis of HCCLM3 Liver Cancer Cells

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The culture medium was discarded from a sample of 4×105 HCCLM3 liver cancer cells. Cells were washed with phosphate-buffered saline (PBS) twice prior to digestion with a Trypsin/EDTA solution. Following this, cells were incubated at 37°C in an incubator containing 5% CO2 until they were detached from the surface of the plate (~1 min). The cells collected were scattered with PBS and subsequently gathered by low-speed centrifugation (840 × g for 5 min at 4°C). Cells were mixed with 70% ice-cold alcohol and stored at −20°C overnight. The mixture was then centrifuged (840 × g for 5 min at 4°C) and the alcohol solution was removed to obtain the cell pellet. Following resuspension in PBS, 0.1% Triton-100, 4 mg/ml of RNase A (Beyotime Institute of Biotechnology) and 2 mg/ml of propidium iodide (PI) were added into the cells. Cells were then incubated at room temperature in the dark for 30 min, a 35-micron nylon mesh was included to filter the cell suspension. A flow cytometry instrument (Beckman Coulter, Inc., Brea, CA, USA) and cell cycle analysis software (Modfit Version 4.0; Verity Software House, Topsham, ME, USA) were used to analyze the cell cycle distribution in HCCLM3 liver cancer cells, according to the manufacturers' protocols.
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8

Cell Cycle Analysis of Tumor Cell Lines

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MG63, SAOS2, and ZK58 cells were seeded in 6-well plates and treated for 48 h the next day with 5 (MG63 and SAOS2) or 60 nM (ZK58) of FK866, or 0.1% DMSO. Drug dose was defined as the IC75 determined in a 72 h exposure in 2D. Adherent cells were trypsinized and collected with supernatant. Cells were centrifuged, washed with PBS, and fixed in cold methanol for at least 20 min, as described in [45 (link)]. Cells were stained for 30 min with DAPI in PBS/1% Bovine serum albumin/0.05% Tween and stored at 4 °C overnight. At least 10,000 single cell events were measured with the NucleoCounter NC-250 (Chemometec, Lillerød, Denmark), and analyzed using Winlist 3D Version 8, and Modfit Version 4.1.7 (Verity Software House, Topsham, ME, USA).
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9

Cell Cycle Analysis of Talazoparib Cytotoxicity

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CH2879, JJ012, and SW1353 cells were seeded in 6 well plates (9 × 104 to 21 × 104 cells/well). After overnight attachment, cultures were treated with 500 nM talazoparib or the solvent control DMSO for 24 h or 48 h. After the indicated treatment times, adherent cells and supernatant were collected in one sample. Cells were counted, fixed, and washed as described before [58 (link)]. Cells were stained with 4 µM 4’,6-diamidino-2-fenylindool (DAPI) in PBS/1% Bovine serum albumin (BSA)/0.05% Tween20 for 30 min at room temperature and stored at 4 °C overnight. Readout and analysis were performed with the NucleoCounter NC-250 (Chemometec, Denmark), Winlist 3D Version 8, and Modfit Version 4.1.7 (Verity Software House, Topsham, ME, USA). Each analysis measured >10,000 single cell events with a coefficient of variation (CV)lower than 4. A statistical model with a polynomial S-phase shape showed the best fit (Reduced chi-square (RCS) between 1 and 3). Experiments were repeated three times.
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10

P129 Dose-Dependent Cell Cycle Analysis

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LN18 (1.5 × 105 cells/well) and A172 (2 × 105 cells/well) in the logarithmic growth phase were transferred into 6-well microplates and cultured for 12 h. Thereafter, both cell lines were treated with P129 (0, 7.5, 15, and 30 μM) for 48 h and then fixed with 70% pre-cooled ethanol overnight at – 20 ℃. Subsequently, the cells were collected and washed (× 2) with phosphate-buffered saline (PBS) and then incubated with PI/RNase dye in the dark for 20 min. The data for the stained cells were acquired using FACSCalibur flow cytometer (Becton Dickinson, San Diego, CA, USA) and analyzed using ModFit Version 4.1.7 (Verity Software House, USA).
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