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3 protocols using goat anti mouse 62 6520

1

Protein Extraction and Analysis via SDS-PAGE and Western Blot

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For protein level analyses, proteins were extracted from germ cells using RIPA buffer (Santa Cruz) containing 1× protease inhibitor cocktail (Roche). Protein concentration was calculated using a Bicinchoninic acid (BCA) protein assay kit (Pierce). Lanes of 6%, 10%, 15%, and 4–15% gradient SDS polyacrylamide gels (Bio-Rad) were loaded with 20 µl of 1 mg/ml protein extract. Following protein separation via standard SDS–PAGE, proteins were transferred to polyvinylidene difluoride (PVDF) membranes using the Trans-Blot Turbo Western transfer system (Bio-Rad). Primary antibodies and dilution used are presented in Supplemental Table S2. At a 1:5000 dilution, goat anti-mouse (62-6520) and goat anti-rabbit (A10533) horseradish peroxidase–conjugated antibodies (Invitrogen) were used as secondary antibodies. The presence of antibodies on the PVDF membranes was detected via treatment with Pierce ECL Western blotting substrate (Thermo Scientific) and captured using the Syngene XR5 gel documentation system. Protein levels were assessed using Image J (NIH).
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2

Protein Extraction and Western Blot Analysis

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Total protein extracts were prepared as follows: Cells were trypsined and washed with cold DPBS 1X (ThermoFisher) and then were centrifuged at 200 × g for 10 min at 4 °C. Cell pellets were suspended in 50 µL of ice-cold lysis buffer [100 mM Tris-HCl, pH 7.4, 1% Triton, 0.25% sodium deoxycholate, 0.1% SDS, 300 mM NaCl, 1 mM EDTA, 1X PhosSTOP (Sigma), 1X Protease Inhibitor Cocktail (Sigma)]. Protein concentrations were determined using the Pierce BCA Protein Assay Kit (ThermoFisher). Migration of an equal mass of total protein and of 5 µL PageRuler Plus Prestained Protein Ladder, 10 to 250 kDa (ThermoFisher) was carried out on an 8% acrylamide denaturing gel. Proteins were transferred onto a nitrocellulose membrane using Trans-Blot Turbo Transfer System (Bio-Rad, city, state abbreviation if USA or Canada, country). The primary antibodies used against NRF1, p-AMPK, p-ACC and tubulin were mouse ab55744 (Abcam, Cambridge, United Kingdom), rabbit #07-681 (Merck), rabbit #11818 (Cell Signaling, Danvers, MA, USA), and mouse T5168 (Sigma), respectively. Incubation of the membrane with the primary antibodies was performed according to the manufacturer’s protocol. The secondary antibodies used were goat anti-rabbit #65-6120 and goat anti-mouse #62-6520 (Invitrogen). Detection of proteins was performed by chemiluminescence using Clarity Western ECL Blotting Substrate (Bio-Rad).
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3

Western Blot Analysis of Germ Cell Proteins

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For protein level analyses, proteins were extracted from germ cells using RIPA buffer (Santa Cruz) containing 1× protease inhibitor cocktail (Roche). Protein concentration was calculated using a BCA protein assay kit (Pierce). Lanes of 4–15% gradient SDS polyacrylamide gels (Bio-Rad) were loaded with 20 µl of 1 mg/ml protein extract. For STA-PUT, 20 µl of 0.1 mg/ml protein extracts from purified leptotene/zygotene and pachytene/diplotene stage spermatocytes and round spermatids were loaded per lane on SDS polyacrylamide gels. Following protein separation via standard SDS–PAGE, proteins were transferred to polyvinylidene difluoride (PVDF) membranes using the Trans-Blot Turbo Western transfer system (Bio-Rad). Primary antibodies and dilution used are presented in Supplemental Table S2. At a 1:5000 dilution, goat anti-mouse (62-6520) and goat anti-rabbit (A10533) horseradish peroxidase–conjugated antibodies (Invitrogen) were used as secondary antibodies. The presence of antibodies on the PVDF membranes was detected via treatment with Pierce ECL Western blotting substrate (Thermo Scientific) and captured using the Syngene XR5 gel documentation system. Protein levels were assessed using Image J (NIH).
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