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Abi prism 3130 3500 genetic analyzer

Manufactured by Thermo Fisher Scientific
Sourced in United States

The ABI PRISM 3130/3500 Genetic Analyzer is a DNA sequencing instrument designed for high-throughput genetic analysis. It utilizes capillary electrophoresis technology to separate and detect DNA fragments labeled with fluorescent dyes. The instrument is capable of processing multiple samples simultaneously, providing efficient and reliable data for various genomic applications.

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2 protocols using abi prism 3130 3500 genetic analyzer

1

Genetic Profiling of AKR1A1 in Whole Blood

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Genome was purified from whole blood by SRL (Tokyo, Japan), which is a private clinical laboratory test company. Polymerase chain reaction (PCR) amplification was performed using the primer sets and PCR kits (Supplementary Table S1) as per the manufacturer’s instructions. All coding regions, exon–intron boundaries, 5′ untranslated region (UTR), and 3′ UTR of AKR1A1 were examined by directly sequencing the PCR products using BigDye Terminator Cycle Sequencing Kit (Applied Biosystems, Foster City, CA, United States) and ABI PRISM 3130/3500 Genetic Analyzer (Applied Biosystems). We read both strands when an inserted or deleted nucleotide yielded dual signals derived from the wild-type (WT) and mutant strands. AKR1A1 sequence analysis was performed based on RefSeq NM_006066. Variant data we found are deposited in the NCBI dbSNP: NCBI_subsnp# are 2137544288 and 5316170415–5316170441.
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2

Genetic Analysis of TARDBP and C9orf72 in Brain Tissue

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Genomic DNA was purified from brain tissue using the QIAamp DNA Mini Kit (QIAGEN). Mutations in coding regions and exon−intron boundaries of TARDBP were examined by direct sequencing using the BigDye Terminator Cycle Sequencing Kit (Applied Biosystems) and an ABI PRISM 3130/3500 Genetic Analyzer (Applied Biosystems). TARDBP sequence analysis was performed based on RefSeq: NM_007375.4 from the UCSC Genome Browser (https://genome.ucsc.edu/). No mutations in TARDBP were detected in either case. Wild-type numbers of GGGGCC hexanucleotide repeats in intron 1 of C9orf72 were detected in both individuals using a repeat-primed polymerase chain reaction (Asuragen AmplideX PCR/CE C9orf72 kit). Individual one had eight repeats and individual two had two repeats.
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